ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2105

TrivialName: PA14_40600

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_40600

PAO1 Ortholog Locus: PA1850

Sequence Length: 1005

Protein Length: 334

Start: 3623926

Stop: 3624930

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05239.1|AE004611_4 (AE004611) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] Identities = 330/334 (98%), Positives = 332/334 (99%)

Sequence:

ATGCCCGAACCACGCCTGATTGCCTGCCTGATCTATCCCGACGTGATGAGCCTGGACGTGACCGGACCGCTG
CAGGTATTCGCCTCGGCCAACGTCGAACGCCAGCGCCAGGGTCTGCCGCCTTTCTACCGGATACAGGTGCTC
GGCGAGCGTAGCGAAGCGGTGCCCAGTTCCGCGGGCATCCGCATCTGCGCCGACCTCGCCTGGCGCGACTGT
CCGCCGGAAAGCCTGGACACCCTGTTGGTGCCCGGCGGCCTCGGTGTCGAGGCGCAGACCCGCAACGCCGAC
CTGCTCGCCTGGCTGAAAGCCGCCGAACCGCGCATACGGCGGCTCGGCTCGGTGTGTTCGGGAGCGCTGATC
CTGGCCGCCGCCGGGGTTCTCGACGGGCACCCAGCGACCACCCACTGGGCCGACGTGGCGACGCTGCGCCAG
GGGTTTCCCGGCGTCCATGTGCAAGGCGACCGCCTGCACACCTACGACCCGCAGTGCCGCGACGGCGACGCC
CACATCTTCACCTCGGCCGGCGTCACGGCGGGAATCGACCTGGCCCTGGCGCTGGTCGAGGCCGACCTCGGC
CGCAGCCTGGCGCTCAGCGTCGCGCGACGCCTGGTGATGTTCCTCAAGCGTCCTGGCGGCCAGGCCCAGTTC
AGCGCCTGGCTGACCCCGGAACCGAGCCGCACCCCGCGCCTGGCCGCGCTGCTGGAGTGGATTCCCGCCAAC
CTCGCCGGCGACCTGTCCCTGGAAGCCCTCGCCGACCGGGCCTGCATGAGCCCGCGTACGTTGTCCCGGGTA
TTTCTCCAGGAACTGGGCGTGGCGCCCGGTCGCTACGTCGAGCGGGTTCGCCTGGAGGCCGCGCGCGCCCTG
CTGCAGGACGCCCAGGCATCGATCGCTACGGTGTCCCGGCTGTGCGGCTTCGGCCATCCGGAAAACCTCCGG
CGGACGTTCCACAAGCATCTTTCGGTCAGCCCCCAGGAATACGCCGAACGCTTCGGCATGCTGGCCTGA

Translation:

MPEPRLIACLIYPDVMSLDVTGPLQVFASANVERQRQGLPPFYRIQVLGERSEAVPSSAGIRICADLAWRDC
PPESLDTLLVPGGLGVEAQTRNADLLAWLKAAEPRIRRLGSVCSGALILAAAGVLDGHPATTHWADVATLRQ
GFPGVHVQGDRLHTYDPQCRDGDAHIFTSAGVTAGIDLALALVEADLGRSLALSVARRLVMFLKRPGGQAQF
SAWLTPEPSRTPRLAALLEWIPANLAGDLSLEALADRACMSPRTLSRVFLQELGVAPGRYVERVRLEAARAL
LQDAQASIATVSRLCGFGHPENLRRTFHKHLSVSPQEYAERFGMLA*

AnnotationID:2113 GeneID:2105

AnnotatorUID: diggins

Modification Date/Time: 2005-03-02 05:05:27

Gene Name:

Confidence Code: 3

GeneProduct: putative transcriptional regulator

Cell Localization: ()

Synonyms: PA1850

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (25) Transcriptional regulators

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG4977

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>dbj|BAC69378.1| (AP005027) putative AraC-family transcriptional regulator
           [Streptomyces avermitilis MA-4680]
          Length = 334

 Score =  266 bits (679), Expect = 2e-70
 Identities = 159/328 (48%), Positives = 203/328 (61%), Gaps = 20/328 (6%)

>gb|AAO55375.1| (AE016862) transcriptional regulator, AraC family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 320

 Score =  213 bits (541), Expect = 2e-54
 Identities = 133/324 (41%), Positives = 184/324 (56%), Gaps = 13/324 (4%)

Structural Features:

COG4977, COG4977, Transcriptional regulator containing an amidase domain 
and an AraC-type DNA-binding HTH domain [Transcription]
CD-Length = 328 residues,  97.3% aligned
Score =  287 bits (735), Expect = 1e-78
Identities = 131/333 (39%), Positives = 167/333 (50%), Gaps = 14/333 (4%)

Genomic Context:

Comment:

ReferenceID:4213

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21359

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37064

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2105_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2105

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3609 PA1850_tr translation of PA1850 334 98.80 99.40 0 1696.0

110610 gb|AAG05239.1|AE004611_4 (AE004611) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 334 98.80 99.40 0 1696.0

110612 emb|CAB40696.1| (AL939129) putative transcriptional regulator [Streptomyces coelicolor A3(2)] 343 46.64 57.72 27 675.0

110611 dbj|BAC69378.1| (AP005027) putative AraC-family transcriptional regulator [Streptomyces avermitilis MA-4680] 352 45.17 57.95 36 691.0

110614 emb|CAE15917.1| (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] 335 45.07 59.40 13 636.0

GC ORFID: `45107`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1850`	Glimmer Score:
Start: `1329984`	Stop: `1328980`
Length: `1005`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1850 translation of PA1850`	Homolog Bit Score `657.0`
Other Homologs: `t_PA1850 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCCGAACCACGCCTGATTGCCTGCCTGATCTATCCCGACGTGATGAGCCTGGACGTGACCGGACCGCTG CAGGTATTCGCCTCGGCCAACGTCGAACGCCAGCGCCAGGGTCTGCCGCCTTTCTACCGGATACAGGTGCTC GGCGAGCGTAGCGAAGCGGTGCCCAGTTCCGCGGGCATCCGCATCTGCGCCGACCTCGCCTGGCGCGACTGT CCGCCGGAAAGCCTGGACACCCTGTTGGTGCCCGGCGGCCTCGGTGTCGAGGCGCAGACCCGCAACGCCGAC CTGCTCGCCTGGCTGAAAGCCGCCGAACCGCGCATACGGCGGCTCGGCTCGGTGTGTTCGGGAGCGCTGATC CTGGCCGCCGCCGGGGTTCTCGACGGGCACCCAGCGACCACCCACTGGGCCGACGTGGCGACGCTGCGCCAG GGGTTTCCCGGCGTCCATGTGCAAGGCGACCGCCTGCACACCTACGACCCGCAGTGCCGCGACGGCGACGCC CACATCTTCACCTCGGCCGGCGTCACGGCGGGAATCGACCTGGCCCTGGCGCTGGTCGAGGCCGACCTCGGC CGCAGCCTGGCGCTCAGCGTCGCGCGACGCCTGGTGATGTTCCTCAAGCGTCCTGGCGGCCAGGCCCAGTTC AGCGCCTGGCTGACCCCGGAACCGAGCCGCACCCCGCGCCTGGCCGCGCTGCTGGAGTGGATTCCCGCCAAC CTCGCCGGCGACCTGTCCCTGGAAGCCCTCGCCGACCGGGCCTGCATGAGCCCGCGTACGTTGTCCCGGGTA TTTCTCCAGGAACTGGGCGTGGCGCCCGGTCGCTACGTCGAGCGGGTTCGCCTGGAGGCCGCGCGCGCCCTG CTGCAGGACGCCCAGGCATCGATCGCTACGGTGTCCCGGCTGTGCGGCTTCGGCCATCCGGAAAACCTCCGG CGGACGTTCCACAAGCATCTTTCGGTCAGCCCCCAGGAATACGCCGAACGCTTCGGCATGCTGGCCTGA