ViewGene
Locus Name:
GeneID:
Location:

GeneID:2104
TrivialName: PA14_52740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52740
PAO1 Ortholog Locus:PA0893
Sequence Length:990
Protein Length:329
Start: 4675181
Stop: 4674192
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04282.1|AE004523_10 (AE004523) transcriptional regulator ArgR [Pseudomonas aeruginosa PAO1]
Identities = 329/329 (100%), Positives = 329/329 (100%)
Sequence:
ATGACTGCCCAACCCCAACGCATCGGTTTCCTCCTCTGGCCCGCCACCCGCGCGCTGACGCTATCGCTTGCC
GAGGAAGCCCTGCGGGCGGCCCGGCGGTTGCACCCCGAGGCGCTCTACGAGCCGCTGTTCCTGCTCGCCGAA
GCGCCGGCCGAAGAGGAGGGCTGGCGCCTGCCGGGAACGGCCTGGAACGGCAGGCTGGAGCAATGCTCGCGG
CTGTTCCTGGTCGCCGACGAGGCGCCGGCGGCGGTGTCGCCAGCGCTGGGCCTGGCGCTCAAGCAACTGGCG
CGTTCGGGAGCGGCGATCGGCGCGCTGTCCGCCGGCATCTACCCGCTGGCCCAGCTCGGCCTGCTCGACGGT
TATCGCGCCGCGGTGCACTGGCGTTGGCACGATGACTTCACCGAGCGCTTCCCCAAGGTCATCGCCACCAAC
CACCTGTTCGAGTGGGATCGCGACCGCATGACCGCCTGCGGCGGCATGGCGGTACTCGACCTGCTGTTGGCG
CTGCTGTCCCGCGACCATGGCGCTGAACTGGCCGGCGCGGTCTCGGAGGAGTTGGTGGTGGAGCGCATCCGC
GAAGGCAACGAGCGCCAGCGCATCCCGCTGAAGAATCGCCTCGGCTCCAGCCATCCGAAGCTGACCCAGGCG
GTACTGCTGATGGAAGCCAATATCGAGGAGCCACTGACCACCGACGAGATCGCCCAGCATGTGTGCGTTTCG
CGGCGCCAGTTGGAACGGATCTTCAAGCAATACCTGAACCGCGTACCCAGCCAGTACTACCTGGAGCTGCGC
CTGAACCGCGCGCGGCAGATGCTGATGCAGACCAGCAAGTCGATCATCCAGATCGGCCTGTCCTGCGGTTTC
TCTTCCGGGCCGCATTTCTCCAGCGCCTACCGCAACTTCTTCGGCGTCACTCCGCGCGAGGACCGCAACCAG
CGGCGCGGCGGCAGCGCCTTCGAGACGACCTTCACTCCCGTCGAACGCGGCTGA
Translation:
MTAQPQRIGFLLWPATRALTLSLAEEALRAARRLHPEALYEPLFLLAEAPAEEEGWRLPGTAWNGRLEQCSR
LFLVADEAPAAVSPALGLALKQLARSGAAIGALSAGIYPLAQLGLLDGYRAAVHWRWHDDFTERFPKVIATN
HLFEWDRDRMTACGGMAVLDLLLALLSRDHGAELAGAVSEELVVERIREGNERQRIPLKNRLGSSHPKLTQA
VLLMEANIEEPLTTDEIAQHVCVSRRQLERIFKQYLNRVPSQYYLELRLNRARQMLMQTSKSIIQIGLSCGF
SSGPHFSSAYRNFFGVTPREDRNQRRGGSAFETTFTPVERG*
AnnotationID:2112GeneID:2104
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 17:05:00
Gene Name:argR
Confidence Code:1
GeneProduct:transcriptional regulator ArgR
Cell Localization:()
Synonyms:PA0893
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4977
Secondary Functional Category(ies):Amino acid biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4977, Transcriptional regulator containing an amidase domain and an AraC-type 
DNA-binding HTH domain [Transcription]
      CD-Length = 328 residues,  98.2% aligned
      Score =  311 bits (798), Expect = 1e-85






   
Genomic Context:






   
Comment:


















    ReferenceID:4211




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21357




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32002




  
Author/Investigator(s):
        Nishijyo T, Park SM, Lu CD, Itoh Y, Abdelal AT.






  
Title:
        Molecular characterization and regulation of an operon encoding a system for transport of arginine and ornithine and the ArgR regulatory protein in Pseudomonas aeruginosa.





  
PubMed:
        99008987


MedLine:
        




    
Source:
J Bacteriol. 1998 Nov;180(21):5559-66






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2104
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3606
                           PA0893_tr
                           translation of PA0893
                           329
                           99.99
                           99.99
                           0
                           1694.0
     

     
     
110593
                           gb|AAC46008.1|
                           (AF011922) ArgR regulatory protein [Pseudomonas aeruginosa]
                           329
                           99.99
                           99.99
                           0
                           1694.0
     

     
     
110592
                           gb|AAC71075.1|
                           (AF012537) ArgR [Pseudomonas aeruginosa]
                           329
                           99.99
                           99.99
                           0
                           1694.0
     

     
     
110591
                           gb|AAC45653.1|
                           (AF008308) arginine regulatory protein [Pseudomonas aeruginosa]
                           329
                           99.99
                           99.99
                           0
                           1694.0
     

     
     
110590
                           gb|AAG04282.1|AE004523_10
                           (AE004523) transcriptional regulator ArgR [Pseudomonas aeruginosa PAO1]
                           329
                           99.99
                           99.99
                           0
                           1694.0
     

     






      

          
GC ORFID: 45106How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0893Glimmer Score: 

          
Start: 278726Stop: 279715

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0893 translation of PA0893Homolog Bit Score 657.0

          
Other Homologs:  t_PA5389 (ORF: BLASTX 216.0), t_PA0893 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGCCCAACCCCAACGCATCGGTTTCCTCCTCTGGCCCGCCACCCGCGCGCTGACGCTATCGCTTGCC 
GAGGAAGCCCTGCGGGCGGCCCGGCGGTTGCACCCCGAGGCGCTCTACGAGCCGCTGTTCCTGCTCGCCGAA 
GCGCCGGCCGAAGAGGAGGGCTGGCGCCTGCCGGGAACGGCCTGGAACGGCAGGCTGGAGCAATGCTCGCGG 
CTGTTCCTGGTCGCCGACGAGGCGCCGGCGGCGGTGTCGCCAGCGCTGGGCCTGGCGCTCAAGCAACTGGCG 
CGTTCGGGAGCGGCGATCGGCGCGCTGTCCGCCGGCATCTACCCGCTGGCCCAGCTCGGCCTGCTCGACGGT 
TATCGCGCCGCGGTGCACTGGCGTTGGCACGATGACTTCACCGAGCGCTTCCCCAAGGTCATCGCCACCAAC 
CACCTGTTCGAGTGGGATCGCGACCGCATGACCGCCTGCGGCGGCATGGCGGTACTCGACCTGCTGTTGGCG 
CTGCTGTCCCGCGACCATGGCGCTGAACTGGCCGGCGCGGTCTCGGAGGAGTTGGTGGTGGAGCGCATCCGC 
GAAGGCAACGAGCGCCAGCGCATCCCGCTGAAGAATCGCCTCGGCTCCAGCCATCCGAAGCTGACCCAGGCG 
GTACTGCTGATGGAAGCCAATATCGAGGAGCCACTGACCACCGACGAGATCGCCCAGCATGTGTGCGTTTCG 
CGGCGCCAGTTGGAACGGATCTTCAAGCAATACCTGAACCGCGTACCCAGCCAGTACTACCTGGAGCTGCGC 
CTGAACCGCGCGCGGCAGATGCTGATGCAGACCAGCAAGTCGATCATCCAGATCGGCCTGTCCTGCGGTTTC 
TCTTCCGGGCCGCATTTCTCCAGCGCCTACCGCAACTTCTTCGGCGTCACTCCGCGCGAGGACCGCAACCAG 
CGGCGCGGCGGCAGCGCCTTCGAGACGACCTTCACTCCCGTCGAACGCGGCTGA