ViewGene
Locus Name:
GeneID:
Location:

GeneID:2103
TrivialName: PA14_55250
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55250
PAO1 Ortholog Locus:PA0701
Sequence Length:987
Protein Length:328
Start: 4907687
Stop: 4906701
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04090.1|AE004505_11 (AE004505) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 326/328 (99%), Positives = 326/328 (99%)
Sequence:
ATGGCCCTATCGGAGTCCGCCGGGCAGCGCCCGGCACTGCTCAGGCCCGCGCAGGGACGCGACGACCGTGCC
TATTGGCACGAGCTGTTCGGTTCTCTGGAGGTGGTGCATTTCTTCCTGGTCACCGCCCGTTGCGGCTGTTTC
ATGCAGGCTGCGCGCAGCCTGGACGTCAAGCCGACACTGCTGCGCAAGACCCTGGCCCGGCTCGAGGAGCGC
CTCGGCCTGCATCTGTTCGTGCATGAGGGCAACGCCCTCTCGCTGACCCGCGAGGGCCGCATCGTCCAGGCC
GCCGGGCAGCGCCTGGTCGAGGACAGCCAGAGCCACGCCGATCTTCACCGGCAACAGCCGCTGGTGCGCCTG
GCGGTGGCCGAAAGCGTCCTGCACGATGTGCTCAGTCGCGAGCTGTGGGGCTACCTGCGCAAGAACGCCAAC
CTGCGCGTAGCCCTCGCCGAGTTGCGCGAGGGCTGGCCGGAAAGCGCAGGGCCGGCGGAGATCGCCATCTGG
ATCGCCGATCCGGGGCAGCCGCATCCGCCGATGGAAGGCCACTTCGCCGCACCGGCGCGCATCGCCGAGCTG
GAGTACCAGCCGCACATCGGCAAGCGCTATTCGCGCGAGCGCACGCGGCCGGCCAGCGAGGACGAGCTGGAC
GACTACCTGCTGGCGCAGCTCCACGGCCAGGCCGCCAGCGCCGCCCTGGCGCCCTGGAACCGGCGGGTGGCG
GCTCGCCAGTCGGGAGTGATCGAGGTACAGAGCCACGACCTGCTGCTACAGGCGATCCTCTGGGGCGCCTGC
ATCGGCCTGCTGCCGCATTACGCCGGACGCCTGGAGCGCAACCTGGCGGCGTTGCCGCAGGTCTTCGACGAG
CCGATGCGGCGGGAAGTCTGGATGAGCGTGCAGCCGGAAGCGGAGAACCGCGTGGAGGTGCGTGCCTTGCTC
GATCTGATCGAGCACGCCTTCGACGATCGGCGCGACTGGTTCGGACGCTGA
Translation:
MALSESAGQRPALLRPAQGRDDRAYWHELFGSLEVVHFFLVTARCGCFMQAARSLDVKPTLLRKTLARLEER
LGLHLFVHEGNALSLTREGRIVQAAGQRLVEDSQSHADLHRQQPLVRLAVAESVLHDVLSRELWGYLRKNAN
LRVALAELREGWPESAGPAEIAIWIADPGQPHPPMEGHFAAPARIAELEYQPHIGKRYSRERTRPASEDELD
DYLLAQLHGQAASAALAPWNRRVAARQSGVIEVQSHDLLLQAILWGACIGLLPHYAGRLERNLAALPQVFDE
PMRREVWMSVQPEAENRVEVRALLDLIEHAFDDRRDWFGR*
AnnotationID:2111GeneID:2103
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 17:05:54
Gene Name:
Confidence Code:3
GeneProduct:probable transcriptional regulator
Cell Localization:()
Synonyms:PA0701
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0583, LysR, Transcriptional regulator [Transcription]
 CD-Length = 297 residues,  99.7% aligned
 Score = 69.6 bits (169), Expect = 1e-12







   
Genomic Context:






   
Comment:


















    ReferenceID:4209




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21355




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2103
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3605
                           PA0701_tr
                           translation of PA0701
                           328
                           99.39
                           99.39
                           0
                           1694.0
     

     
     
110589
                           gb|AAG04090.1|AE004505_11
                           (AE004505) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           328
                           99.39
                           99.39
                           0
                           1694.0
     

     






      

          
GC ORFID: 45105How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0701Glimmer Score: 

          
Start: 46220Stop: 47206

          
Length: 987


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0701 translation of PA0701Homolog Bit Score 657.0

          
Other Homologs:  t_PA0701 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCCTATCGGAGTCCGCCGGGCAGCGCCCGGCACTGCTCAGGCCCGCGCAGGGACGCGACGACCGTGCC 
TATTGGCACGAGCTGTTCGGTTCTCTGGAGGTGGTGCATTTCTTCCTGGTCACCGCCCGTTGCGGCTGTTTC 
ATGCAGGCTGCGCGCAGCCTGGACGTCAAGCCGACACTGCTGCGCAAGACCCTGGCCCGGCTCGAGGAGCGC 
CTCGGCCTGCATCTGTTCGTGCATGAGGGCAACGCCCTCTCGCTGACCCGCGAGGGCCGCATCGTCCAGGCC 
GCCGGGCAGCGCCTGGTCGAGGACAGCCAGAGCCACGCCGATCTTCACCGGCAACAGCCGCTGGTGCGCCTG 
GCGGTGGCCGAAAGCGTCCTGCACGATGTGCTCAGTCGCGAGCTGTGGGGCTACCTGCGCAAGAACGCCAAC 
CTGCGCGTAGCCCTCGCCGAGTTGCGCGAGGGCTGGCCGGAAAGCGCAGGGCCGGCGGAGATCGCCATCTGG 
ATCGCCGATCCGGGGCAGCCGCATCCGCCGATGGAAGGCCACTTCGCCGCACCGGCGCGCATCGCCGAGCTG 
GAGTACCAGCCGCACATCGGCAAGCGCTATTCGCGCGAGCGCACGCGGCCGGCCAGCGAGGACGAGCTGGAC 
GACTACCTGCTGGCGCAGCTCCACGGCCAGGCCGCCAGCGCCGCCCTGGCGCCCTGGAACCGGCGGGTGGCG 
GCTCGCCAGTCGGGAGTGATCGAGGTACAGAGCCACGACCTGCTGCTACAGGCGATCCTCTGGGGCGCCTGC 
ATCGGCCTGCTGCCGCATTACGCCGGACGCCTGGAGCGCAACCTGGCGGCGTTGCCGCAGGTCTTCGACGAG 
CCGATGCGGCGGGAAGTCTGGATGAGCGTGCAGCCGGAAGCGGAGAACCGCGTGGAGGTGCGTGCCTTGCTC 
GATCTGATCGAGCACGCCTTCGACGATCGGCGCGACTGGTTCGGACGCTGA