ViewGene
Locus Name:
GeneID:
Location:

GeneID:2101
TrivialName: PA14_04920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04920
PAO1 Ortholog Locus:PA0375
Sequence Length:1008
Protein Length:335
Start: 434298
Stop: 435305
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03764.1|AE004475_6 (AE004475) cell division protein FtsX [Pseudomonas aeruginosa PAO1]
Identities = 335/335 (100%), Positives = 335/335 (100%)
Sequence:
ATGAGCGCCAACGATCTTCCCCGTGGCCCCGAAGAGGGCGCACCGGAACGCAAGACCCGCGAGAAACCGAGC
CAGGAACAGACCGACTGGAGCGGCTCGTTCAGCGCCTACCTGGAAAGCCATCGCGCCAGCCTGGTGGACAGC
CTGCGCCGGTTGTTCGGCCACCCGTTCGGCAGCTTCTTCACCTGCCTGGTGATGGGTATCACCCTGAGCCTG
CCGATGGGCCTTTCGCTGCTGCTGAACAATGTCGAACGGCTCGGCGGCTCCTGGCAGCGCGCCGCGCAGATC
TCCCTGTTCCTCGACCTGAAGACCAGCGAAAACCAGGGCCAGGACCTGCGCGAGCAGATCGAGCGCCTGCCG
GACGTGATCGAGGCCCAACTGATCAGCCGCGAGCAGGCGCTCAGCGAATTGCAGGAACAGTCCGGCCTGGGC
GAAGCGCTCAAGGAGCTGCCGGAGAACCCACTGCCGCCGGTGATCTCGGTCACGCCCAAGCAGATCGATCGG
GCCGGCCTGGAGGCACTGCGCCAGCAGCTCGCGGAGCTGCCTCATGTGCAGCAGGCGCAGCTCGACCTGGTA
TGGGTCGAGCGCCTGAGCGCGATCCTAAAGCTCGGCGAACGCTTCGTCTTCGGCCTGACTATCCTGCTGGTG
CTGACTCTCTTGCTGGTGGTGGGCAACACCATCCGCCTGCACATCGAAAATCGCCGTAACGAAATCGAGGTG
ATCAAGCTGGTCGGCGGGACGGACGGTTACGTGCGCCGGCCATTCCTGTACATGGGCGCGTTGTACGGCCTG
GGCGCGGGCATCCTGTCCTGGGCGCTGCTGGCCTATTCGCTGAACTGGCTGAACGGTTCGGTGGTCAACCTT
TCAGGGCTGTACGGCAGCGACTTCGGCCTGCAGGGCGTGCCGCTGGACGACGGCCTGTCGCTCACCGTCGGC
GCGGTGCTGCTTGGCTGGGTCGGCGCCTGGCTGGCCGTGGCCCGCCACCTGCGCGAGCTGGCGCCGCGCTGA
Translation:
MSANDLPRGPEEGAPERKTREKPSQEQTDWSGSFSAYLESHRASLVDSLRRLFGHPFGSFFTCLVMGITLSL
PMGLSLLLNNVERLGGSWQRAAQISLFLDLKTSENQGQDLREQIERLPDVIEAQLISREQALSELQEQSGLG
EALKELPENPLPPVISVTPKQIDRAGLEALRQQLAELPHVQQAQLDLVWVERLSAILKLGERFVFGLTILLV
LTLLLVVGNTIRLHIENRRNEIEVIKLVGGTDGYVRRPFLYMGALYGLGAGILSWALLAYSLNWLNGSVVNL
SGLYGSDFGLQGVPLDDGLSLTVGAVLLGWVGAWLAVARHLRELAPR*
AnnotationID:2109GeneID:2101
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 06:06:43
Gene Name:ftsX
Confidence Code:2
GeneProduct:cell division ABC transporter, permease protein FtsX
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2177
Secondary Functional Category(ies):transport of small molecules
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53973.1| (AE016857) putative protein insertion permease FtsX [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 344

 Score =  464 bits (1194), Expect = e-130
 Identities = 238/344 (69%), Positives = 276/344 (80%), Gaps = 9/344 (2%)

>gb|AAN70674.1|AE016711_2 (AE016793) cell division ABC efflux transporter, permease protein
           FtsX [Pseudomonas putida KT2440]
          Length = 341

 Score =  447 bits (1150), Expect = e-125
 Identities = 223/326 (68%), Positives = 265/326 (81%), Gaps = 1/326 (0%)








 
Structural Features:
COG2177, FtsX, Cell division protein [Cell division and chromosome partitioning]
CD-Length = 297 residues,  99.7% aligned
Score =  277 bits (709), Expect = 2e-75
Identities = 127/299 (42%), Positives = 176/299 (58%), Gaps = 3/299 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4205




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21351




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33720




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2101_cdd.html


    		




 
URL:

















    ReferenceID:35396




  
Author/Investigator(s):
        Tyagi JS, Das TK, Kinger AK.





  
Title:
        An M. tuberculosis DNA fragment contains genes encoding cell division proteins ftsX and ftsE, a basic protein and homologues of PemK and small protein B.




  
PubMed:
        8921846


MedLine:
        




    
Source:
Gene. 1996 Oct 24;177(1-2):59-67.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8921846

















    ReferenceID:35397




  
Author/Investigator(s):
        Gill DR, Salmond GP.





  
Title:
        The Escherichia coli cell division proteins FtsY, FtsE and FtsX are inner membrane-associated.




  
PubMed:
        3323846


MedLine:
        




    
Source:
Mol Gen Genet. 1987 Dec;210(3):504-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3323846









           
Homologs By Global Alignment 

           

       



     
Gene ID:2101
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3604
                           PA0375_tr
                           translation of PA0375
                           335
                           99.99
                           99.99
                           0
                           1698.0
     

     
     
110582
                           gb|AAG03764.1|AE004475_6
                           (AE004475) cell division protein FtsX [Pseudomonas aeruginosa PAO1]
                           335
                           99.99
                           99.99
                           0
                           1698.0
     

     
     
110583
                           gb|AAO53973.1|
                           (AE016857) putative protein insertion permease FtsX [Pseudomonas syringae pv. tomato str. DC3000]
                           344
                           69.18
                           80.23
                           9
                           1200.0
     

     
     
110584
                           dbj|BAA83807.1|
                           (AB025418) cell division protein FtsX [Pseudomonas putida]
                           341
                           66.27
                           78.88
                           6
                           1160.0
     

     
     
110585
                           gb|AAN70674.1|AE016711_2
                           (AE016793) cell division ABC efflux transporter, permease protein FtsX [Pseudomonas putida KT2440]
                           341
                           65.98
                           78.59
                           6
                           1152.0
     

     






      

          
GC ORFID: 45103How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0375Glimmer Score: 

          
Start: 6235640Stop: 6236647

          
Length: 1008


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0375 translation of PA0375Homolog Bit Score 658.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6608 (ORF: BLASTX 466.0), t_PA0375 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCCAACGATCTTCCCCGTGGCCCCGAAGAGGGCGCACCGGAACGCAAGACCCGCGAGAAACCGAGC 
CAGGAACAGACCGACTGGAGCGGCTCGTTCAGCGCCTACCTGGAAAGCCATCGCGCCAGCCTGGTGGACAGC 
CTGCGCCGGTTGTTCGGCCACCCGTTCGGCAGCTTCTTCACCTGCCTGGTGATGGGTATCACCCTGAGCCTG 
CCGATGGGCCTTTCGCTGCTGCTGAACAATGTCGAACGGCTCGGCGGCTCCTGGCAGCGCGCCGCGCAGATC 
TCCCTGTTCCTCGACCTGAAGACCAGCGAAAACCAGGGCCAGGACCTGCGCGAGCAGATCGAGCGCCTGCCG 
GACGTGATCGAGGCCCAACTGATCAGCCGCGAGCAGGCGCTCAGCGAATTGCAGGAACAGTCCGGCCTGGGC 
GAAGCGCTCAAGGAGCTGCCGGAGAACCCACTGCCGCCGGTGATCTCGGTCACGCCCAAGCAGATCGATCGG 
GCCGGCCTGGAGGCACTGCGCCAGCAGCTCGCGGAGCTGCCTCATGTGCAGCAGGCGCAGCTCGACCTGGTA 
TGGGTCGAGCGCCTGAGCGCGATCCTAAAGCTCGGCGAACGCTTCGTCTTCGGCCTGACTATCCTGCTGGTG 
CTGACTCTCTTGCTGGTGGTGGGCAACACCATCCGCCTGCACATCGAAAATCGCCGTAACGAAATCGAGGTG 
ATCAAGCTGGTCGGCGGGACGGACGGTTACGTGCGCCGGCCATTCCTGTACATGGGCGCGTTGTACGGCCTG 
GGCGCGGGCATCCTGTCCTGGGCGCTGCTGGCCTATTCGCTGAACTGGCTGAACGGTTCGGTGGTCAACCTT 
TCAGGGCTGTACGGCAGCGACTTCGGCCTGCAGGGCGTGCCGCTGGACGACGGCCTGTCGCTCACCGTCGGC 
GCGGTGCTGCTTGGCTGGGTCGGCGCCTGGCTGGCCGTGGCCCGCCACCTGCGCGAGCTGGCGCCGCGCTGA