ViewGene
Locus Name:
GeneID:
Location:

GeneID:2100
TrivialName: PA14_22930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22930
PAO1 Ortholog Locus:PA3193
Sequence Length:996
Protein Length:331
Start: 1988578
Stop: 1989573
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06581.1|AE004743_4 (AE004743) glucokinase [Pseudomonas aeruginosa PAO1]
Identities = 330/331 (99%), Positives = 330/331 (99%)
Sequence:
ATGAATAACGACAACAAGAGAAGCGCCGGCGGCCTCGGCCTGGTCGGCGATATCGGCGGCACCAATGCGCGT
TTCGCGCTCTGGCGCGGGCAGCGCCTGGAATCCATCGAGGTGCTCGCCTGCGCCGACTACCCACGGCCTGAA
CTGGCCGTGCGCGACTACCTGGCGCGGATCGGCGAATCGGTGGCGAACATCGACTCGGTCTGCCTGGCCTGC
GCCGGTCCGGTTGGGGCGGCGGATTTCCGTTTCACCAACAACCACTGGGTGATCAATCGCGCCGCGTTCCGC
GAGGAGCTGGGGCTGGATCACCTGCTGCTGGTCAACGACTTCAGCACCATGGCCTGGGCCGCCTCGCGGCTG
GGCGCGGACGAGCTGGTGCAGGTCCGGGCCGGCAGCGCCCAGGCGGATCGCGCCCGGCTGATCATCGGTCCC
GGCACCGGCCTTGGCGTCGGCAGCCTGCTGCCGCTGGGCGGGGGACGTTGGGAAGTGCTGCCCTGCGAGGGC
GGGCATGTCGACCTGCCGGTCACTTCGCCGCGCGACTTCGCGCTCTGGCAGGGCCTGCAGGCGCGCTACGGA
CACGTCTCCGCCGAGCGCGCACTGTCCGGCAACGGCCTGCTCGCCCTCTATGAAATCAGCTGTGCCCTGGAC
GGGGTCGCCGTCCGCGCGAGCAGTGCGGCGGAAGTCGGTGCCCTGGCCATGGCCGGCGACGCCCAGGCGGAC
GCCGTGCTGGAGCACTTCTTCCTGTGGCTGGCGCGGGTCGCCGGCAACGCGGTGCTCACCGTCGGCGCGCTC
GGTGGCGTCTACATTACCGGCGGCATCGTCCCGCGTTTCCTCGAGCGCTTCATCGCCAGCGGTTTCGCCGAG
GCCTTCGCCAGGCGTGGCAAGACCAGTGGCGCTTACCTGCAGGACGTACCGGTGTGGGTCATGACCGCCGAA
CATCCGGGCCTGCTCGGCGCCGGCGTCGCCCTGCAGCAGGCCCTGGACGCCGAGGGCTGA
Translation:
MNNDNKRSAGGLGLVGDIGGTNARFALWRGQRLESIEVLACADYPRPELAVRDYLARIGESVANIDSVCLAC
AGPVGAADFRFTNNHWVINRAAFREELGLDHLLLVNDFSTMAWAASRLGADELVQVRAGSAQADRARLIIGP
GTGLGVGSLLPLGGGRWEVLPCEGGHVDLPVTSPRDFALWQGLQARYGHVSAERALSGNGLLALYEISCALD
GVAVRASSAAEVGALAMAGDAQADAVLEHFFLWLARVAGNAVLTVGALGGVYITGGIVPRFLERFIASGFAE
AFARRGKTSGAYLQDVPVWVMTAEHPGLLGAGVALQQALDAEG*
AnnotationID:2108GeneID:2100
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 07:07:10
Gene Name:glk
Confidence Code:2
GeneProduct:glucokinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam02685,COG0837
Secondary Functional Category(ies):transcriptional regulator
EC Number:2.7.1.2
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54813.1| (AE016860) glucokinase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 321

 Score =  332 bits (850), Expect = 2e-90
 Identities = 168/319 (52%), Positives = 217/319 (68%), Gaps = 1/319 (0%

>gb|AAN66636.1|AE016291_5 (AE016777) glucokinase [Pseudomonas putida KT2440]
          Length = 319

 Score =  329 bits (844), Expect = 1e-89
 Identities = 173/315 (54%), Positives = 214/315 (67%), Gaps = 1/315 (0%)






 
Structural Features:
pfam02685, Glucokinase
CD-Length = 326 residues,  98.2% aligned
Score =  239 bits (611), Expect = 4e-64
Identities = 118/321 (36%), Positives = 159/321 (49%), Gaps = 10/321 (3%)

COG0837, Glk, Glucokinase [Carbohydrate transport and metabolism]
CD-Length = 320 residues, 100.0% aligned
Score =  356 bits (914), Expect = 3e-99
Identities = 161/325 (49%), Positives = 199/325 (61%), Gaps = 9/325 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4203




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21349




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32350




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2100_cdd.html


    		




 
URL:

















    ReferenceID:33976




  
Author/Investigator(s):
        Temple L, Cuskey SM, Perkins RE, Bass RC, Morales NM, Christie GE, Olsen RH, Phibbs PV Jr.





  
Title:
        Analysis of cloned structural and regulatory genes for carbohydrate utilization in Pseudomonas aeruginosa PAO.




  
PubMed:
        2121713


MedLine:
        




    
Source:
J Bacteriol. 1990 Nov;172(11):6396-402.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=2121713









           
Homologs By Global Alignment 

           

       



     
Gene ID:2100
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3603
                           PA3193_tr
                           translation of PA3193
                           331
                           99.69
                           99.69
                           0
                           1698.0
     

     
     
110577
                           gb|AAG06581.1|AE004743_4
                           (AE004743) glucokinase [Pseudomonas aeruginosa PAO1]
                           331
                           99.69
                           99.69
                           0
                           1698.0
     

     
     
110579
                           gb|AAN66636.1|AE016291_5
                           (AE016777) glucokinase [Pseudomonas putida KT2440]
                           333
                           51.95
                           64.56
                           16
                           833.0
     

     
     
110578
                           gb|AAO54813.1|
                           (AE016860) glucokinase [Pseudomonas syringae pv. tomato str. DC3000]
                           331
                           50.75
                           65.55
                           10
                           843.0
     

     
     
110581
                           emb|CAD18708.1|
                           (AL646085) PROBABLE GLUCOKINASE PROTEIN [Ralstonia solanacearum]
                           361
                           40.72
                           53.73
                           40
                           585.0
     

     






      

          
GC ORFID: 45102How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3193Glimmer Score: 

          
Start: 2965353Stop: 2964358

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3193 translation of PA3193Homolog Bit Score 658.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4415 (ORF: BLASTX 326.0), t_PA3193 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATAACGACAACAAGAGAAGCGCCGGCGGCCTCGGCCTGGTCGGCGATATCGGCGGCACCAATGCGCGT 
TTCGCGCTCTGGCGCGGGCAGCGCCTGGAATCCATCGAGGTGCTCGCCTGCGCCGACTACCCACGGCCTGAA 
CTGGCCGTGCGCGACTACCTGGCGCGGATCGGCGAATCGGTGGCGAACATCGACTCGGTCTGCCTGGCCTGC 
GCCGGTCCGGTTGGGGCGGCGGATTTCCGTTTCACCAACAACCACTGGGTGATCAATCGCGCCGCGTTCCGC 
GAGGAGCTGGGGCTGGATCACCTGCTGCTGGTCAACGACTTCAGCACCATGGCCTGGGCCGCCTCGCGGCTG 
GGCGCGGACGAGCTGGTGCAGGTCCGGGCCGGCAGCGCCCAGGCGGATCGCGCCCGGCTGATCATCGGTCCC 
GGCACCGGCCTTGGCGTCGGCAGCCTGCTGCCGCTGGGCGGGGGACGTTGGGAAGTGCTGCCCTGCGAGGGC 
GGGCATGTCGACCTGCCGGTCACTTCGCCGCGCGACTTCGCGCTCTGGCAGGGCCTGCAGGCGCGCTACGGA 
CACGTCTCCGCCGAGCGCGCACTGTCCGGCAACGGCCTGCTCGCCCTCTATGAAATCAGCTGTGCCCTGGAC 
GGGGTCGCCGTCCGCGCGAGCAGTGCGGCGGAAGTCGGTGCCCTGGCCATGGCCGGCGACGCCCAGGCGGAC 
GCCGTGCTGGAGCACTTCTTCCTGTGGCTGGCGCGGGTCGCCGGCAACGCGGTGCTCACCGTCGGCGCGCTC 
GGTGGCGTCTACATTACCGGCGGCATCGTCCCGCGTTTCCTCGAGCGCTTCATCGCCAGCGGTTTCGCCGAG 
GCCTTCGCCAGGCGTGGCAAGACCAGTGGCGCTTACCTGCAGGACGTACCGGTGTGGGTCATGACCGCCGAA 
CATCCGGGCCTGCTCGGCGCCGGCGTCGCCCTGCAGCAGGCCCTGGACGCCGAGGGCTGA