ViewGene

Locus Name:
GeneID:
Location:

GeneID:210
TrivialName: PA14_53360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53360
PAO1 Ortholog Locus:PA0844
Sequence Length:2193
Protein Length:730
Start: 4730156
Stop: 4732348
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04233.1|AE004519_4 (AE004519) hemolytic phospholipase C precursor [Pseudomonas aeruginosa PAO1]
Identities = 725/730 (99%), Positives = 728/730 (99%)
Sequence:
ATGACCGAAAACTGGAAATTCCGCCGTCGAACCTTTCTCAAGCACGGCGCCCAGGCCGCTACCCTGGCCGGC
CTTTCCGGGCTGTTCCCGGAGACGCTCCGGCGCGCCCTGGCCATCGAGCCGGACATCCGCACCGGAACCATC
CAGGACGTCCAGCACGTGGTCATCCTGATGCAGGAGAACCGCAGCTTCGATCACTACTTCGGCCACCTCAAC
GGCGTCCGCGGCTTCAACGATCCTCGCGCGCTCAAGCGCCAGGACGGCAAGCCGGTCTGGTACCAGAACTAC
AAGTACGAGTTCTCCCCCTATCACTGGGATACCAAAGTCACCAGCGCCCAGTGGGTGAGTTCGCAGAACCAT
GAATGGTCGGCCTTCCACGCGATCTGGAACCAGGGCCGCAACGACAAGTGGATGGCGGTGCAGTACCCCGAA
GCCATGGGCTACTTCAAGCGCGGCGACATTCCCTACTACTACGCCCTGGCCGACGCCTTCACCCTGTGCGAG
GCCTACCACCAGTCGATGATGGGCCCGACCAATCCGAACCGCCTCTACCACATGAGCGGACGCGCCGCCCCC
AGCGGCGACGGCAAGGACGTACACATCGGCAACGACATGGGCGACGGCACCATCGGCGCCAGCGGCACGGTG
GACTGGACCACCTATCCCGAGCGGCTAAGCGCCGCTGGCGTGGACTGGCGGGTCTACCAGGAAGGCGGCTAC
CGCTCCTCGTCACTCTGGTACCTGTACGTCGACGCCTACTGGAAATACCGGCTCCAGGAGCAGAACAACTAC
GACTGCAACGCCCTCGCCTGGTTCAGGAACTTCAAGAACGCTCCGCGCGATTCGGACCTCTGGCAGCGCGCC
ATGCTCGCCCGCGGCGTCGACCAGTTGCGCAAGGATGTGCAAGAAAACACGCTGCCGCAGGTGTCCTGGATC
GTCGCGCCCTACTGCTACTGCGAGCATCCCTGGTGGGGCCCCTCGTTCGGCGAGTACTACGTGACCCGGGTG
CTCGACGCGCTGACCAGCAACCCCGAGGTCTGGGCCAGGACCGTGTTCATCCTCAACTACGACGAGGGCGAC
GGCTTCTATGACCACGCCAGCGCCCCGGTGCCGCCGTGGAAGGATGGCGTCGGCCTTTCCACGGTCAGCACC
GCCGGCGAGATCGAGGCATCCAGCGGGCTGCCCATCGGGCTCGGCCACCGCGTCCCGCTGATCGCCATCTCG
CCCTGGTCGAAGGGCGGCAAGGTCAGCGCCGAAGTGTTCGACCATACCTCGGTGCTGCGCTTCCTCGAACGC
CGCTTCGGCGTCGTCGAGGAAAACATCTCGCCCTGGCGGCGTGCCGTCTGCGGCGACCTGACTTCGCTGTTC
GACTTCCAGGACGCAGGCGATACCCAGGTCGCCCCCGACCTGACCAACGTCCCGCAGAGCGACGCGCGCAAG
GAGGACGCCTACTGGCAGCAGTTCTACCGGCCCAGCCCCAAGTACTGGTCCTACGAGCCCAAGAGCCTGCCC
GGCCAGGAAAAGGGCCAGCGCCCTACCCTCGCGGTGCCCTACCAGTTGCACGCCACGCTGGCCCTCGACATC
GCCGCCGGCAAGCTGCGCCTGACCCTGGGCAACGACGGCATGAGCCTGCCGGGCAATCCGCAGGGACACTCC
GCTGCGGTATTCCAGGTGCAGCCGCGGGAAGTCGGCAATCCGCGTTTCTATACCGTGACCAGCTATCCGGTG
GTCCAGGAAAGCGGAGAGGAACTGGGCCGGACCCTCAACGACGAACTCGACGACCTGCTCGACGCCAACGGC
CGCTACGCCTTCGAGGTGCACGGCCCCAACGGCTTCTTCCGCGAGTTCCACGGCAACCTGCATCTCGCCGCG
CAGATGGCGCGGCCCGAGGTATCGGTCACCTATCAACGCAACGGCAACCTGCAGTTGAACATCCGCAATCTC
GGCCGCCTGCCGTGCAGCGTGACGGTGACGCCGAACCCGGCCTATACCCAGGAGGGCAGCCGTCGCTATGAA
CTCGAACCGAACCAGGCGATCAGTGAAGTGTGGCTGTTACGCAGCAGCCAGGGCTGGTACGACCTCAGCGTG
ACCGCCAGCAATACGGAAGCCAACTATCTCCGCCGCCTGGCCGGACACGTCGAGACCGGCAAGCCGAGCAGG
AGCGATCCATTGCTCGACATCGCAGCGACCTGA
Translation:
MTENWKFRRRTFLKHGAQAATLAGLSGLFPETLRRALAIEPDIRTGTIQDVQHVVILMQENRSFDHYFGHLN
GVRGFNDPRALKRQDGKPVWYQNYKYEFSPYHWDTKVTSAQWVSSQNHEWSAFHAIWNQGRNDKWMAVQYPE
AMGYFKRGDIPYYYALADAFTLCEAYHQSMMGPTNPNRLYHMSGRAAPSGDGKDVHIGNDMGDGTIGASGTV
DWTTYPERLSAAGVDWRVYQEGGYRSSSLWYLYVDAYWKYRLQEQNNYDCNALAWFRNFKNAPRDSDLWQRA
MLARGVDQLRKDVQENTLPQVSWIVAPYCYCEHPWWGPSFGEYYVTRVLDALTSNPEVWARTVFILNYDEGD
GFYDHASAPVPPWKDGVGLSTVSTAGEIEASSGLPIGLGHRVPLIAISPWSKGGKVSAEVFDHTSVLRFLER
RFGVVEENISPWRRAVCGDLTSLFDFQDAGDTQVAPDLTNVPQSDARKEDAYWQQFYRPSPKYWSYEPKSLP
GQEKGQRPTLAVPYQLHATLALDIAAGKLRLTLGNDGMSLPGNPQGHSAAVFQVQPREVGNPRFYTVTSYPV
VQESGEELGRTLNDELDDLLDANGRYAFEVHGPNGFFREFHGNLHLAAQMARPEVSVTYQRNGNLQLNIRNL
GRLPCSVTVTPNPAYTQEGSRRYELEPNQAISEVWLLRSSQGWYDLSVTASNTEANYLRRLAGHVETGKPSR
SDPLLDIAAT*
AnnotationID:220GeneID:210
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 16:04:17
Gene Name:plcH
Confidence Code:1
GeneProduct:hemolytic phospholipase C precursor
Cell Localization:()
Synonyms:PA0844, plcS, phlC 
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(23) Secreted Factors (toxins, enzymes, alginate)
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3511, pfam04185
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3511, PlcC, Phospholipase C.  Score: 612, 1e-175
pfam04185, Phosphoesterase, Phosphoesterase family. Score: 370, 6e-103
Genomic Context:
Comment:
ReferenceID:423
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17565
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:210

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
360 PA0844_tr translation of PA0844 730 99.31 99.72 0 3955.0
21967 gb|AAG04233.1|AE004519_4 (AE004519) hemolytic phospholipase C precursor [Pseudomonas aeruginosa PAO1] 730 99.31 99.72 0 3955.0
21968 gb|AAA25966.1| (M13047) phospholipase C precursor [Pseudomonas aeruginosa] 730 97.26 97.80 0 3859.0
21970 gb|AAM55475.1| (AY114143) non-hemolytic phospholipase C [Burkholderia thailandensis] 760 43.15 54.47 85 1434.0
21969 gb|AAF17299.1| (AF107252) non-hemolytic phospholipase C [Burkholderia pseudomallei] 758 42.87 55.27 86 1438.0
GC ORFID: 43212How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0844Glimmer Score:
Start: 223751Stop: 221559
Length: 2193
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0844 translation of PA0844Homolog Bit Score 1528.0
Other Homologs: t_PA3319 (ORF: BLASTX 504.0), t_PA0844 (ORF: GLIMMER)
GC ORF Sequence
ATGACCGAAAACTGGAAATTCCGCCGTCGAACCTTTCTCAAGCACGGCGCCCAGGCCGCTACCCTGGCCGGC
CTTTCCGGGCTGTTCCCGGAGACGCTCCGGCGCGCCCTGGCCATCGAGCCGGACATCCGCACCGGAACCATC
CAGGACGTCCAGCACGTGGTCATCCTGATGCAGGAGAACCGCAGCTTCGATCACTACTTCGGCCACCTCAAC
GGCGTCCGCGGCTTCAACGATCCTCGCGCGCTCAAGCGCCAGGACGGCAAGCCGGTCTGGTACCAGAACTAC
AAGTACGAGTTCTCCCCCTATCACTGGGATACCAAAGTCACCAGCGCCCAGTGGGTGAGTTCGCAGAACCAT
GAATGGTCGGCCTTCCACGCGATCTGGAACCAGGGCCGCAACGACAAGTGGATGGCGGTGCAGTACCCCGAA
GCCATGGGCTACTTCAAGCGCGGCGACATTCCCTACTACTACGCCCTGGCCGACGCCTTCACCCTGTGCGAG
GCCTACCACCAGTCGATGATGGGCCCGACCAATCCGAACCGCCTCTACCACATGAGCGGACGCGCCGCCCCC
AGCGGCGACGGCAAGGACGTACACATCGGCAACGACATGGGCGACGGCACCATCGGCGCCAGCGGCACGGTG
GACTGGACCACCTATCCCGAGCGGCTAAGCGCCGCTGGCGTGGACTGGCGGGTCTACCAGGAAGGCGGCTAC
CGCTCCTCGTCACTCTGGTACCTGTACGTCGACGCCTACTGGAAATACCGGCTCCAGGAGCAGAACAACTAC
GACTGCAACGCCCTCGCCTGGTTCAGGAACTTCAAGAACGCTCCGCGCGATTCGGACCTCTGGCAGCGCGCC
ATGCTCGCCCGCGGCGTCGACCAGTTGCGCAAGGATGTGCAAGAAAACACGCTGCCGCAGGTGTCCTGGATC
GTCGCGCCCTACTGCTACTGCGAGCATCCCTGGTGGGGCCCCTCGTTCGGCGAGTACTACGTGACCCGGGTG
CTCGACGCGCTGACCAGCAACCCCGAGGTCTGGGCCAGGACCGTGTTCATCCTCAACTACGACGAGGGCGAC
GGCTTCTATGACCACGCCAGCGCCCCGGTGCCGCCGTGGAAGGATGGCGTCGGCCTTTCCACGGTCAGCACC
GCCGGCGAGATCGAGGCATCCAGCGGGCTGCCCATCGGGCTCGGCCACCGCGTCCCGCTGATCGCCATCTCG
CCCTGGTCGAAGGGCGGCAAGGTCAGCGCCGAAGTGTTCGACCATACCTCGGTGCTGCGCTTCCTCGAACGC
CGCTTCGGCGTCGTCGAGGAAAACATCTCGCCCTGGCGGCGTGCCGTCTGCGGCGACCTGACTTCGCTGTTC
GACTTCCAGGACGCAGGCGATACCCAGGTCGCCCCCGACCTGACCAACGTCCCGCAGAGCGACGCGCGCAAG
GAGGACGCCTACTGGCAGCAGTTCTACCGGCCCAGCCCCAAGTACTGGTCCTACGAGCCCAAGAGCCTGCCC
GGCCAGGAAAAGGGCCAGCGCCCTACCCTCGCGGTGCCCTACCAGTTGCACGCCACGCTGGCCCTCGACATC
GCCGCCGGCAAGCTGCGCCTGACCCTGGGCAACGACGGCATGAGCCTGCCGGGCAATCCGCAGGGACACTCC
GCTGCGGTATTCCAGGTGCAGCCGCGGGAAGTCGGCAATCCGCGTTTCTATACCGTGACCAGCTATCCGGTG
GTCCAGGAAAGCGGAGAGGAACTGGGCCGGACCCTCAACGACGAACTCGACGACCTGCTCGACGCCAACGGC
CGCTACGCCTTCGAGGTGCACGGCCCCAACGGCTTCTTCCGCGAGTTCCACGGCAACCTGCATCTCGCCGCG
CAGATGGCGCGGCCCGAGGTATCGGTCACCTATCAACGCAACGGCAACCTGCAGTTGAACATCCGCAATCTC
GGCCGCCTGCCGTGCAGCGTGACGGTGACGCCGAACCCGGCCTATACCCAGGAGGGCAGCCGTCGCTATGAA
CTCGAACCGAACCAGGCGATCAGTGAAGTGTGGCTGTTACGCAGCAGCCAGGGCTGGTACGACCTCAGCGTG
ACCGCCAGCAATACGGAAGCCAACTATCTCCGCCGCCTGGCCGGACACGTCGAGACCGGCAAGCCGAGCAGG
AGCGATCCATTGCTCGACATCGCAGCGACCTGA