ViewGene
Locus Name:
GeneID:
Location:

GeneID:2098
TrivialName: PA14_04160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04160
PAO1 Ortholog Locus:PA0319
Sequence Length:990
Protein Length:329
Start: 373079
Stop: 374068
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03708.1|AE004470_2 (AE004470) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 328/329 (99%), Positives = 329/329 (100%)
Sequence:
ATGCCCTTTCATGGCGACGCCCAAGAAAACACCTGGCCAAACAGTCGAGCCTCGCCCATGTCCCTTGCCTCC
AAGCTTCCCCGTTTCCGCTGGCTGCTGCCGGCGTTCGTCGTGCTCGTCGGCGTGGTGCTGACCATCGTCATG
CATTGGGACGATCGCGCCGGCCTTTGGTGGAAGGAAAGCCAGGCCAGCCAGCAGCAGCGCGACGACAGCATC
TGGCTGCCGGGCTATCGGGTGGTGATCGACGCCAAGCCGTTGCAGGGCCTGGAGGAGGAAGAAACCTCGGAC
CTGGCCTACAACCCGGCAACCAGGACCCTGTTCACCGTTACCGGCAAGCGGCCGCTGCTGGTGGAGCTGTCG
CTCACCGGCGACGTGCTGCGCACCATCCCGCTGCTCGGCCTGAGCAATCCCGAAGGCGTGGCGGTGCTGGAG
AACGGCAACGTCGCGGTGACCGACGAGCGCCGCAATACCCTGACCATCTTCCATGTCGACCCGCAGACCGCC
GAACTGAGCACCAAGAGCCTGGCCGAATTCCCGCTGGGCAATATCGGCAAGAAGAACAAGGGCTTCGAGGGC
ATCGCCTGGGATCCGCGCCAGCAGCGTCTGTTGCTGAGCAAGGAGCGCGATCCGATGACCCTGTTCAGCTGG
AAGAGCGACGGCGGGCCGAGCCTGAGCGGGGCGATGACCGCGCTACCGAGCGACGACCTTTACATGCGCAAC
GTCTCGGCGCTCAGCGTCGACCCGCGTACCGGGCATACGCTGGTGCTGTCGGCCGAATCGCATCTGCTGCTG
GAGCTGGACGAGAAGGGCGAACCGGTCAGCTTCATCAGCCTGCTCGGCGGCTTCAACGGCCTGGACAGCAAG
ATCCCGCGCGCCGAAGGGGTGGCCATCGACGACGAGGGCACCATCTACATGGTCAGCGAGCCGAACCTGTTC
TACGTGTTCCGCAAGAAGAGCGGCGAGCGCCTGGCCACCAGCGACGCCGATTAA
Translation:
MPFHGDAQENTWPNSRASPMSLASKLPRFRWLLPAFVVLVGVVLTIVMHWDDRAGLWWKESQASQQQRDDSI
WLPGYRVVIDAKPLQGLEEEETSDLAYNPATRTLFTVTGKRPLLVELSLTGDVLRTIPLLGLSNPEGVAVLE
NGNVAVTDERRNTLTIFHVDPQTAELSTKSLAEFPLGNIGKKNKGFEGIAWDPRQQRLLLSKERDPMTLFSW
KSDGGPSLSGAMTALPSDDLYMRNVSALSVDPRTGHTLVLSAESHLLLELDEKGEPVSFISLLGGFNGLDSK
IPRAEGVAIDDEGTIYMVSEPNLFYVFRKKSGERLATSDAD*
AnnotationID:2106GeneID:2098
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 12:12:14
Gene Name:
Confidence Code:3
GeneProduct:putatitve transcriptional regulator
Cell Localization:()
Synonyms:PA0319
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam06977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam06977, SdiA-regulated, SdiA-regulated.
CD-Length = 105 residues, 100.0% aligned
Score =  128 bits (322), Expect = 1e-30
Identities = 58/105 (55%), Positives = 70/105 (66%), Gaps = 6/105 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4199




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21345




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33664




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2098_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2098
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3601
                           PA0319_tr
                           translation of PA0319
                           329
                           99.69
                           99.99
                           0
                           1699.0
     

     
     
110561
                           gb|AAG03708.1|AE004470_2
                           (AE004470) hypothetical protein PA0319 [Pseudomonas aeruginosa PAO1]
                           329
                           99.69
                           99.99
                           0
                           1699.0
     

     
     
110562
                           gb|AAN70717.1|AE016715_6
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           334
                           53.59
                           67.36
                           33
                           899.0
     

     
     
110563
                           gb|AAO58717.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           345
                           51.59
                           65.50
                           51
                           874.0
     

     
     
110565
                           gb|AAO58716.1|
                           (AE016875) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           345
                           34.20
                           50.72
                           49
                           495.0
     

     






      

          
GC ORFID: 45100How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0319Glimmer Score: 

          
Start: 6174421Stop: 6175410

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0319 translation of PA0319Homolog Bit Score 659.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6526 (ORF: BLASTX 334.0), psyr_15may02_Scaffold6_revised_gene6527 (ORF: BLASTX 191.0), t_PA0319 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCTTTCATGGCGACGCCCAAGAAAACACCTGGCCAAACAGTCGAGCCTCGCCCATGTCCCTTGCCTCC 
AAGCTTCCCCGTTTCCGCTGGCTGCTGCCGGCGTTCGTCGTGCTCGTCGGCGTGGTGCTGACCATCGTCATG 
CATTGGGACGATCGCGCCGGCCTTTGGTGGAAGGAAAGCCAGGCCAGCCAGCAGCAGCGCGACGACAGCATC 
TGGCTGCCGGGCTATCGGGTGGTGATCGACGCCAAGCCGTTGCAGGGCCTGGAGGAGGAAGAAACCTCGGAC 
CTGGCCTACAACCCGGCAACCAGGACCCTGTTCACCGTTACCGGCAAGCGGCCGCTGCTGGTGGAGCTGTCG 
CTCACCGGCGACGTGCTGCGCACCATCCCGCTGCTCGGCCTGAGCAATCCCGAAGGCGTGGCGGTGCTGGAG 
AACGGCAACGTCGCGGTGACCGACGAGCGCCGCAATACCCTGACCATCTTCCATGTCGACCCGCAGACCGCC 
GAACTGAGCACCAAGAGCCTGGCCGAATTCCCGCTGGGCAATATCGGCAAGAAGAACAAGGGCTTCGAGGGC 
ATCGCCTGGGATCCGCGCCAGCAGCGTCTGTTGCTGAGCAAGGAGCGCGATCCGATGACCCTGTTCAGCTGG 
AAGAGCGACGGCGGGCCGAGCCTGAGCGGGGCGATGACCGCGCTACCGAGCGACGACCTTTACATGCGCAAC 
GTCTCGGCGCTCAGCGTCGACCCGCGTACCGGGCATACGCTGGTGCTGTCGGCCGAATCGCATCTGCTGCTG 
GAGCTGGACGAGAAGGGCGAACCGGTCAGCTTCATCAGCCTGCTCGGCGGCTTCAACGGCCTGGACAGCAAG 
ATCCCGCGCGCCGAAGGGGTGGCCATCGACGACGAGGGCACCATCTACATGGTCAGCGAGCCGAACCTGTTC 
TACGTGTTCCGCAAGAAGAGCGGCGAGCGCCTGGCCACCAGCGACGCCGATTAA