ViewGene
Locus Name:
GeneID:
Location:

GeneID:2097
TrivialName: PA14_11650
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11650
PAO1 Ortholog Locus:PA4035
Sequence Length:1002
Protein Length:333
Start: 1010699
Stop: 1009698
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07422.1|AE004820_7 (AE004820) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 333/333 (100%), Positives = 333/333 (100%)
Sequence:
ATGACAGCCCTCGCCCTTACTTCCCGATCCCTCTTTCCGGCTTGCGCCGCCCTGGCGCTGGGCGGACTGTTG
ACGCTGCTCGCCGGCTCCGTCGCGGCCGCGCCGGCCAAGACGAAACGGCCGCCGTTCATCGAGCAGGGCGAA
ACGTGCCTGCCCCAGCCGCTCCCCGCCAGCGTGCTCTATCTCGCCGGCGACGCCTGGAAGCTCGACGCCAAG
GGCAACCAGACGCCCCTGGAAGAAGGCATGGACATCGACGAACTGGAAGGCGTCAAGACCTCTCCGACCGCC
TTCGTCAGCCTGCTGCTCGGCGACGGCAGCCGCATCGTCCTGCCCTCCAGTTCGGAAGTCACCCTGCACCTC
GACGAGGACACCGGCATTCCGCAGATCGCCCTGCGCGCGGGGCAGGTCGAGTCCTATGTCCTGAAGAGAAAG
AGCGATCACGACCGCTTCCAGGTGCTGACCCCGGTCGGCGTACTGGGCGTGCGCGGTACCCACTTCCGCGCC
CGCACCGAAGACGGCCAGGCGCTGACCGAAGTGCTCGACGGGCGCGTCGCGGTGAACCGCGAGCTGACCAGC
GACGACCTGCCGCTCAACGGCAGGCGCCCGGCCCGCAAGGCGGCGCAGGCCGAGCCGGACGAGGACGTGCTG
GTCGACGCCCGCCGCGGCCTGAAGGTCAAGCCGCAGGGCAAGCTGACGCCGGTGGACCTGCTACCCGCCCCG
CAATTGCGCGGCCAGGGCGGCGAGCACGGCGAGTCGCCGGTTTGGAAGCTCTATCTTGCCCCGCTGCACGGC
GCCAAGCGCTACCGTGCCCAGGTGGCCAGCGATCCGGACTTCCTGCGCATCCAGCAGGAGCGTTTCTCGAGC
ACTCCGGAAGTCAGTTTCAGCGGACTCAAGGCGGCCTTCTACCACGTCCGTCTCTCGGCCTTCGACAACGAC
GGCCTGGAGGGCGAGACCAGCGTCTACGACATTCTCTACTACCCGCGAGGCGGCAGTGCCCGATAG
Translation:
MTALALTSRSLFPACAALALGGLLTLLAGSVAAAPAKTKRPPFIEQGETCLPQPLPASVLYLAGDAWKLDAK
GNQTPLEEGMDIDELEGVKTSPTAFVSLLLGDGSRIVLPSSSEVTLHLDEDTGIPQIALRAGQVESYVLKRK
SDHDRFQVLTPVGVLGVRGTHFRARTEDGQALTEVLDGRVAVNRELTSDDLPLNGRRPARKAAQAEPDEDVL
VDARRGLKVKPQGKLTPVDLLPAPQLRGQGGEHGESPVWKLYLAPLHGAKRYRAQVASDPDFLRIQQERFSS
TPEVSFSGLKAAFYHVRLSAFDNDGLEGETSVYDILYYPRGGSAR*
AnnotationID:2105GeneID:2097
AnnotatorUID: urbach
Modification Date/Time: 2004-10-05 15:03:20
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4035
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4254
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|13502 COG4254, COG4254, Uncharacterized protein conserved in bacteria
[Function unknown]
Length = 339
Score =  380 bits (977), Expect = e-106
Identities = 147/340 (43%), Positives = 172/340 (50%), Gaps = 8/340 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4197




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21343




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2097
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3600
                           PA4035_tr
                           translation of PA4035
                           333
                           99.99
                           99.99
                           0
                           1700.0
     

     
     
110560
                           gb|AAG07422.1|AE004820_7
                           (AE004820) hypothetical protein PA4035 [Pseudomonas aeruginosa PAO1]
                           333
                           99.99
                           99.99
                           0
                           1700.0
     

     






      

          
GC ORFID: 45099How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4035Glimmer Score: 

          
Start: 3943238Stop: 3944239

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4035 translation of PA4035Homolog Bit Score 659.0

          
Other Homologs:  t_PA4035 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAGCCCTCGCCCTTACTTCCCGATCCCTCTTTCCGGCTTGCGCCGCCCTGGCGCTGGGCGGACTGTTG 
ACGCTGCTCGCCGGCTCCGTCGCGGCCGCGCCGGCCAAGACGAAACGGCCGCCGTTCATCGAGCAGGGCGAA 
ACGTGCCTGCCCCAGCCGCTCCCCGCCAGCGTGCTCTATCTCGCCGGCGACGCCTGGAAGCTCGACGCCAAG 
GGCAACCAGACGCCCCTGGAAGAAGGCATGGACATCGACGAACTGGAAGGCGTCAAGACCTCTCCGACCGCC 
TTCGTCAGCCTGCTGCTCGGCGACGGCAGCCGCATCGTCCTGCCCTCCAGTTCGGAAGTCACCCTGCACCTC 
GACGAGGACACCGGCATTCCGCAGATCGCCCTGCGCGCGGGGCAGGTCGAGTCCTATGTCCTGAAGAGAAAG 
AGCGATCACGACCGCTTCCAGGTGCTGACCCCGGTCGGCGTACTGGGCGTGCGCGGTACCCACTTCCGCGCC 
CGCACCGAAGACGGCCAGGCGCTGACCGAAGTGCTCGACGGGCGCGTCGCGGTGAACCGCGAGCTGACCAGC 
GACGACCTGCCGCTCAACGGCAGGCGCCCGGCCCGCAAGGCGGCGCAGGCCGAGCCGGACGAGGACGTGCTG 
GTCGACGCCCGCCGCGGCCTGAAGGTCAAGCCGCAGGGCAAGCTGACGCCGGTGGACCTGCTACCCGCCCCG 
CAATTGCGCGGCCAGGGCGGCGAGCACGGCGAGTCGCCGGTTTGGAAGCTCTATCTTGCCCCGCTGCACGGC 
GCCAAGCGCTACCGTGCCCAGGTGGCCAGCGATCCGGACTTCCTGCGCATCCAGCAGGAGCGTTTCTCGAGC 
ACTCCGGAAGTCAGTTTCAGCGGACTCAAGGCGGCCTTCTACCACGTCCGTCTCTCGGCCTTCGACAACGAC 
GGCCTGGAGGGCGAGACCAGCGTCTACGACATTCTCTACTACCCGCGAGGCGGCAGTGCCCGATAG