ViewGene
Locus Name:
GeneID:
Location:

GeneID:2094
TrivialName: PA14_60920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_60920
PAO1 Ortholog Locus:PA4604
Sequence Length:1005
Protein Length:334
Start: 5435933
Stop: 5434929
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07992.1|AE004874_5 (AE004874) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 333/334 (99%), Positives = 333/334 (99%)
Sequence:
ATGTCCGAAGTAGCCAACGACAACCACGCCCCGATCCCCGTCACCGTGCTCACCGGCTTCCTCGGCGCCGGC
AAGACCACCCTGCTCAAGTACCTGCTGCAGGCCGAGCACGGCATGAAGATCGCGGTGATCGAGAACGAGTAC
AGCGAGACACCGATCGACGGCCAGTTGCTCGGCGTCGAGCCGGTGCAGGTGATGACGTTGTCCAACGGCTGC
GTCTGCTGCTCGATCAACACCGACCTGGAAAAGGCCCTGTTCCTCCTGCTGGAGCGCCGCGACAACGGCGAA
ATCGACTTCGACCGCCTGGTGATCGAGTGCACCGGCCTGGCCGATCCGGCGCCGGTGGCGCAGACCTTCTTC
GCCGACGAGGAACTCTGCCAGCGCTACGTGCTGGACGGCATCATCACCCTGGTGGACGCCGCCAACGCCGAG
CGTCACCTGCAGGAAACCATCGCCCAGGCCCAGGTCGGCTTTGCCGACCGCATCCTGGTGAGCAAGACCGAC
CTGGTCGACGCCGCCACCTTCGAGGCCCTGGGCCAGCGCCTGCAACGGATCAACCGGAGGGCGCTGGTGCAT
GTGGTCGAGCACGGTCGCATCGACCTGGCGCACCTGCTCGACGTACGTGGCTTCAACCTCAACGCCGACCTC
GGTCCTGGCATCGGCCTGCGCCCGCTGCGAGCGGTGGCAGCCAAGGACAGCAGCGATCGCATCGGCACCCTG
GTACTGCGCAGCGACACGCCGCTCGATCTCGAAAGGCTGAGCGAGTTCATGGATGACCTGTTGCAGTGGCAT
GGCAATTCCCTGCTGCGCTACAAGGGCGTGCTGAACATCGCCGACGAGCCGCGTCGCCTGGTGTTCCAGGGC
GTGCTGCGACTCTACGGCTTCGACTGGGATAGCGAGTGGCGGGACGACGAGGCGCGCGAGAGTGTGATCGTG
TTCATCGGCGACAACCTGCCGGAGGACAGTATCCGCGAGGGCTTCGAGCGCATCGTCGAAGGCCGCTGA
Translation:
MSEVANDNHAPIPVTVLTGFLGAGKTTLLKYLLQAEHGMKIAVIENEYSETPIDGQLLGVEPVQVMTLSNGC
VCCSINTDLEKALFLLLERRDNGEIDFDRLVIECTGLADPAPVAQTFFADEELCQRYVLDGIITLVDAANAE
RHLQETIAQAQVGFADRILVSKTDLVDAATFEALGQRLQRINRRALVHVVEHGRIDLAHLLDVRGFNLNADL
GPGIGLRPLRAVAAKDSSDRIGTLVLRSDTPLDLERLSEFMDDLLQWHGNSLLRYKGVLNIADEPRRLVFQG
VLRLYGFDWDSEWRDDEARESVIVFIGDNLPEDSIREGFERIVEGR*
AnnotationID:2102GeneID:2094
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 07:07:32
Gene Name:
Confidence Code:3
GeneProduct:putative cobalamin synthesis protein/P47K family protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0523,pfam02492,KOG2743
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58082.1| (AE016872) cobalamin synthesis protein/P47K family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 325

 Score =  478 bits (1229), Expect = e-134
 Identities = 240/321 (74%), Positives = 277/321 (86%), Gaps = 2/321 (0%)


>gb|AAN83847.1|AE016772_25 (AE016772) Hypothetical protein yjiA [Escherichia coli CFT073]
          Length = 331

 Score =  315 bits (806), Expect = 3e-85
 Identities = 170/325 (52%), Positives = 220/325 (67%), Gaps = 8/325 (2%)








 
Structural Features:
COG0523, Putative GTPases (G3E family) 
CD-Length = 323 residues,  98.5% aligned
Score =  301 bits (771), Expect = 2e-82
Identities = 155/325 (47%), Positives = 201/325 (61%), Gaps = 15/325 (4%)

pfam02492, cobW, Cobalamin synthesis protein/P47K.
CD-Length = 328 residues, 100.0% aligned
Score =  297 bits (763), Expect = 2e-81
Identities = 135/336 (40%), Positives = 178/336 (52%), Gaps = 23/336 (6%)

KOG2743, Cobalamin synthesis protein [Coenzyme transport and metabolism]
CD-Length = 391 residues,  86.2% aligned
Score =  227 bits (580), Expect = 3e-60
Identities = 121/347 (34%), Positives = 190/347 (54%), Gaps = 34/347 (9%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4191




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21337




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31619




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2094_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2094
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3597
                           PA4604_tr
                           translation of PA4604
                           334
                           99.70
                           99.70
                           0
                           1703.0
     

     
     
110498
                           gb|AAG07992.1|AE004874_5
                           (AE004874) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           334
                           99.70
                           99.70
                           0
                           1703.0
     

     
     
110499
                           gb|AAO58082.1|
                           (AE016872) cobalamin synthesis protein/P47K family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           334
                           73.05
                           84.73
                           9
                           1230.0
     

     
     
110500
                           gb|AAN70212.1|AE016660_9
                           (AE016791) CobW/P47K family protein [Pseudomonas putida KT2440]
                           335
                           70.44
                           81.19
                           13
                           1188.0
     

     
     
110501
                           gb|AAM91929.1|AF525419_2
                           (AF525419) YjiA [Xenorhabdus nematophila]
                           342
                           52.63
                           69.29
                           20
                           869.0
     

     






      

          
GC ORFID: 45096How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4604Glimmer Score: 

          
Start: 4699613Stop: 4698609

          
Length: 1005


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4604 translation of PA4604Homolog Bit Score 660.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5405 (ORF: BLASTX 483.0), t_PA4604 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGAAGTAGCCAACGACAACCACGCCCCGATCCCCGTCACCGTGCTCACCGGCTTCCTCGGCGCCGGC 
AAGACCACCCTGCTCAAGTACCTGCTGCAGGCCGAGCACGGCATGAAGATCGCGGTGATCGAGAACGAGTAC 
AGCGAGACACCGATCGACGGCCAGTTGCTCGGCGTCGAGCCGGTGCAGGTGATGACGTTGTCCAACGGCTGC 
GTCTGCTGCTCGATCAACACCGACCTGGAAAAGGCCCTGTTCCTCCTGCTGGAGCGCCGCGACAACGGCGAA 
ATCGACTTCGACCGCCTGGTGATCGAGTGCACCGGCCTGGCCGATCCGGCGCCGGTGGCGCAGACCTTCTTC 
GCCGACGAGGAACTCTGCCAGCGCTACGTGCTGGACGGCATCATCACCCTGGTGGACGCCGCCAACGCCGAG 
CGTCACCTGCAGGAAACCATCGCCCAGGCCCAGGTCGGCTTTGCCGACCGCATCCTGGTGAGCAAGACCGAC 
CTGGTCGACGCCGCCACCTTCGAGGCCCTGGGCCAGCGCCTGCAACGGATCAACCGGAGGGCGCTGGTGCAT 
GTGGTCGAGCACGGTCGCATCGACCTGGCGCACCTGCTCGACGTACGTGGCTTCAACCTCAACGCCGACCTC 
GGTCCTGGCATCGGCCTGCGCCCGCTGCGAGCGGTGGCAGCCAAGGACAGCAGCGATCGCATCGGCACCCTG 
GTACTGCGCAGCGACACGCCGCTCGATCTCGAAAGGCTGAGCGAGTTCATGGATGACCTGTTGCAGTGGCAT 
GGCAATTCCCTGCTGCGCTACAAGGGCGTGCTGAACATCGCCGACGAGCCGCGTCGCCTGGTGTTCCAGGGC 
GTGCTGCGACTCTACGGCTTCGACTGGGATAGCGAGTGGCGGGACGACGAGGCGCGCGAGAGTGTGATCGTG 
TTCATCGGCGACAACCTGCCGGAGGACAGTATCCGCGAGGGCTTCGAGCGCATCGTCGAAGGCCGCTGA