ViewGene
Locus Name:
GeneID:
Location:

GeneID:2093
TrivialName: PA14_18360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18360
PAO1 Ortholog Locus:PA3553
Sequence Length:1020
Protein Length:339
Start: 1577124
Stop: 1576105
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06941.1|AE004776_4 (AE004776) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 338/339 (99%), Positives = 338/339 (99%)
Sequence:
ATGAAGCCCTATCCGATCGACCTGGTCTCGGTGGTGATCCCGGTCTACAACGAGGAAGCCAGCCTGCCCGAA
CTGCTGCGCCGCACCGAGGCCGCCTGCCTGGAGCTGGGCCGCGCCTTCGAGATCGTGCTGGTCGACGACGGC
AGCCGCGACCGCTCCGCGGAACTCTTGCAGGCCGCCGCCGAACGCGACGGCAGCGCCGTGGTGGCGGTGATC
CTCAACCGCAACTACGGCCAGCACGCGGCGATCCTCGCCGGCTTCGAACAGTCCCGTGGAGACCTGGTGATC
ACCCTCGATGCCGACCTGCAGAACCCGCCGGAGGAAATCCCGCGCCTGGTGGAGCGCGCCGCGCAGGGCTAC
GACGTGGTCGGCAGCATCCGCGCCGAGCGCCAGGACTCGGCCTGGCGGCGCTGGCCTTCGCGCCTGGTGAAC
CTGGCGGTGCAGCGCTCCACCGGGGTCGCCATGCACGACTACGGCTGCATGCTGCGCGCCTACCGGCGCAGC
ATCGTCGAAGCGATGCTGGCCTGCCGCGAACGCAGTACCTTCATCCCGATCCTGGCCAACGGCTTCGCCCGG
CATACCTGCGAGATCCGCGTCGCCCACGCCGAGCGCGCCCACGGCGAATCGAAATACAGCGCGATGCGCCTG
CTCAACCTGATGTTCGACCTGGTCACCTGCATGACCACCACGCCGCTGCGCCTGCTCAGCCTGGTCGGCGGC
GGCATGGCCCTGGCCGGCTTCCTCTTCGCCCTGTTCCTCCTCGTGCTGCGCCTGGCCTTCGGCGCCGCCTGG
GCCGGCAACGGCCTGTTCGTGCTGTTCGCCGTGCTGTTCATGTTCAGCGGCGTGCAGTTGCTCGGCATGGGC
CTGCTCGGCGAGTACCTCGGGCGCATGTACAGCGACGTGCGCGCGCGGCCGCGCTTCTTCATCGAGCGCGTG
GTCCGCGCCACGCCCTCCGCGCTTCCCTCGGCCCTACAGCGGGTCGGTTTCACCTCTTCATCCAGCGAGCCT
TCCACGCCATGA
Translation:
MKPYPIDLVSVVIPVYNEEASLPELLRRTEAACLELGRAFEIVLVDDGSRDRSAELLQAAAERDGSAVVAVI
LNRNYGQHAAILAGFEQSRGDLVITLDADLQNPPEEIPRLVERAAQGYDVVGSIRAERQDSAWRRWPSRLVN
LAVQRSTGVAMHDYGCMLRAYRRSIVEAMLACRERSTFIPILANGFARHTCEIRVAHAERAHGESKYSAMRL
LNLMFDLVTCMTTTPLRLLSLVGGGMALAGFLFALFLLVLRLAFGAAWAGNGLFVLFAVLFMFSGVQLLGMG
LLGEYLGRMYSDVRARPRFFIERVVRATPSALPSALQRVGFTSSSSEPSTP*
AnnotationID:2101GeneID:2093
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 05:05:26
Gene Name:
Confidence Code:3
GeneProduct:putative glycosyl transferase
Cell Localization:()
Synonyms:prmF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:putative lipopolysaccharide modification protein
Functional Category Confidence Code:5
COGs:pfam00535,COG0463
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM85485.1|AE013794_6 (AE013794) putative sugar transferase [Yersinia pestis KIM]
          Length = 327

 Score =  428 bits (1101), Expect = e-119
 Identities = 211/311 (67%), Positives = 252/311 (81%)

>gb|AAN81250.1|AE016763_209 (AE016763) Putative glycosyl transferase yfbF [Escherichia coli
           CFT073]
          Length = 322

 Score =  422 bits (1085), Expect = e-117
 Identities = 203/311 (65%), Positives = 255/311 (81%)

>gb|AAO68271.1| (AE016836) putative lipopolysaccharide modification protein
           [Salmonella enterica subsp. enterica serovar Typhi Ty2]
          Length = 327

 Score =  416 bits (1070), Expect = e-116
 Identities = 201/309 (65%), Positives = 252/309 (81%)






 
Structural Features:
pfam00535, Glycos_transf_2, Glycosyl transferase.
CD-Length = 168 residues, 100.0% aligned
Score =  106 bits (266), Expect = 3e-24
Identities = 56/172 (32%), Positives = 85/172 (49%), Gaps = 11/172 (6%)

COG0463, WcaA, Glycosyltransferases involved in cell wall biogenesis 
[Cell envelope biogenesis, outer membrane]
CD-Length = 291 residues,  94.8% aligned
Score =  112 bits (278), Expect = 8e-26
Identities = 90/282 (31%), Positives = 124/282 (43%), Gaps = 10/282 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4189




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21335




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32016




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2093_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2093
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3596
                           PA3553_tr
                           translation of PA3553
                           339
                           99.70
                           99.70
                           0
                           1703.0
     

     
     
110476
                           gb|AAG06941.1|AE004776_4
                           (AE004776) probable glycosyl transferase [Pseudomonas aeruginosa PAO1]
                           339
                           99.70
                           99.70
                           0
                           1703.0
     

     
     
110477
                           gb|AAK69641.1|AF336802_3
                           (AF336802) unknown [Yersinia pseudotuberculosis]
                           340
                           62.35
                           75.58
                           14
                           1095.0
     

     
     
110478
                           gb|AAM85485.1|AE013794_6
                           (AE013794) putative sugar transferase [Yersinia pestis KIM]
                           340
                           62.05
                           75.29
                           14
                           1090.0
     

     
     
110479
                           emb|CAC91225.1|
                           (AJ414152) probable glycosyl transferase [Yersinia pestis CO92]
                           340
                           62.05
                           75.29
                           14
                           1090.0
     

     






      

          
GC ORFID: 45095How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3553Glimmer Score: 

          
Start: 3376811Stop: 3377830

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3553 translation of PA3553Homolog Bit Score 660.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6698 (ORF: BLASTX 506.0), t_PA3553 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGCCCTATCCGATCGACCTGGTCTCGGTGGTGATCCCGGTCTACAACGAGGAAGCCAGCCTGCCCGAA 
CTGCTGCGCCGCACCGAGGCCGCCTGCCTGGAGCTGGGCCGCGCCTTCGAGATCGTGCTGGTCGACGACGGC 
AGCCGCGACCGCTCCGCGGAACTCTTGCAGGCCGCCGCCGAACGCGACGGCAGCGCCGTGGTGGCGGTGATC 
CTCAACCGCAACTACGGCCAGCACGCGGCGATCCTCGCCGGCTTCGAACAGTCCCGTGGAGACCTGGTGATC 
ACCCTCGATGCCGACCTGCAGAACCCGCCGGAGGAAATCCCGCGCCTGGTGGAGCGCGCCGCGCAGGGCTAC 
GACGTGGTCGGCAGCATCCGCGCCGAGCGCCAGGACTCGGCCTGGCGGCGCTGGCCTTCGCGCCTGGTGAAC 
CTGGCGGTGCAGCGCTCCACCGGGGTCGCCATGCACGACTACGGCTGCATGCTGCGCGCCTACCGGCGCAGC 
ATCGTCGAAGCGATGCTGGCCTGCCGCGAACGCAGTACCTTCATCCCGATCCTGGCCAACGGCTTCGCCCGG 
CATACCTGCGAGATCCGCGTCGCCCACGCCGAGCGCGCCCACGGCGAATCGAAATACAGCGCGATGCGCCTG 
CTCAACCTGATGTTCGACCTGGTCACCTGCATGACCACCACGCCGCTGCGCCTGCTCAGCCTGGTCGGCGGC 
GGCATGGCCCTGGCCGGCTTCCTCTTCGCCCTGTTCCTCCTCGTGCTGCGCCTGGCCTTCGGCGCCGCCTGG 
GCCGGCAACGGCCTGTTCGTGCTGTTCGCCGTGCTGTTCATGTTCAGCGGCGTGCAGTTGCTCGGCATGGGC 
CTGCTCGGCGAGTACCTCGGGCGCATGTACAGCGACGTGCGCGCGCGGCCGCGCTTCTTCATCGAGCGCGTG 
GTCCGCGCCACGCCCTCCGCGCTTCCCTCGGCCCTACAGCGGGTCGGTTTCACCTCTTCATCCAGCGAGCCT 
TCCACGCCATGA