ViewGene
Locus Name:
GeneID:
Location:

GeneID:2092
TrivialName: PA14_22640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22640
PAO1 Ortholog Locus:PA3215
Sequence Length:1014
Protein Length:337
Start: 1968939
Stop: 1969952
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06603.1|AE004744_18 (AE004744) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 330/337 (97%), Positives = 332/337 (98%)
Sequence:
ATGCCGGAACGTACAACCTTGTCCAGCTGGGTCCAGGGCATCGTCCTCGCCCTGGAGCTGGAAGGCCTCGAC
GGACGCCAGCTGTTCGCCGAGCTGGGCCTCGACTACCAGGCCCTGCAGGACCCCGACGCGCGCTTCCCGCAG
GATGCGATGAGCCGTCTGTGGCAGCGTGCGGTGGCGCTCAGCGGCAACCCGGCGATCGCCCTGAACATCGCC
CGGGTCCGGCGCCCGGCTTTCCACGTCGTCGGCTATGCGCTGATGTCGAGCCGCAACCTGGCGGAAGGCTTC
GCGCGCCTGGAACGCTACCAGCGGATCATCGCGGAAGCCTCCGACCTGACTTTCTGCCGCACGCCGCAGGGC
TATCGACTCGGCGTCACGGTGCATGGTGATCGCCTGCCGGCGCCGCCGCAGAGTGCCGAATGCTCGCTGGCC
TACCTGGTGGACATGGTCCGCTGGATCACCGGCCGGCCGCTGGACCCGCTGGCGGTGGAACTGCCCGGCGCG
CCCCGCGAGCCGCTGGCACCCTATGCCGAGCTGTTCCGCGCGCCGCTGCGCTTTCACGCCGAGGAGTTCGCG
CTGGTGTTTTCCCGCGTCGACCTCGAGACGCCGCTACCCTCGGCCAACGAGGCGCTGGCCCAGTTGCACGAT
CGCTTCGCCGGCGAATACCTGGCGCGTTTCAGCACCAGCCGCATCACCCATCTGGCCCGGCAGACCCTGTGC
CGGCTGTTGCCGCAGGGAGAACCCAAGCGCGAACGGGTGGCCCAGGCACTGCACCTGTCGCAGCGCACCTTG
CAACGACGCCTCCAGGAGGAGGGCACCAGCTACCAGCAACTGCTCGACGACACACGTCGGGATATGGCCGAT
CAGTATCTCCAGCAGCCCGGCCTGACCTTGCTGGAAGTCGCCTATCTGCTGGGTTTCGCCGATCCGAGCAAT
TTCTTCCGGGCATTCCGCCGCTGGTTCGGCTGCACGCCCAACGAATACCGGGCGCGCCGCCAGGGGCGCCCG
GGCTAG
Translation:
MPERTTLSSWVQGIVLALELEGLDGRQLFAELGLDYQALQDPDARFPQDAMSRLWQRAVALSGNPAIALNIA
RVRRPAFHVVGYALMSSRNLAEGFARLERYQRIIAEASDLTFCRTPQGYRLGVTVHGDRLPAPPQSAECSLA
YLVDMVRWITGRPLDPLAVELPGAPREPLAPYAELFRAPLRFHAEEFALVFSRVDLETPLPSANEALAQLHD
RFAGEYLARFSTSRITHLARQTLCRLLPQGEPKRERVAQALHLSQRTLQRRLQEEGTSYQQLLDDTRRDMAD
QYLQQPGLTLLEVAYLLGFADPSNFFRAFRRWFGCTPNEYRARRQGRPG*
AnnotationID:2100GeneID:2092
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 09:09:02
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA3215
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342,COG2207
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70082.1|AE016647_12 (AE016790) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 353

 Score =  454 bits (1169), Expect = e-127
 Identities = 230/332 (69%), Positives = 265/332 (79%), Gaps = 1/332 (0%)








 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues, 100.0% aligned
Score = 86.0 bits (213), Expect = 6e-18
Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

COG2207, AraC, AraC-type DNA-binding domain-containing proteins 
[Transcription] 
CD-Length = 127 residues,  99.2% aligned
Score = 80.7 bits (198), Expect = 2e-16
Identities = 42/127 (33%), Positives = 63/127 (49%), Gaps = 2/127 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4187




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21333




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32330




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2092_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2092
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3595
                           PA3215_tr
                           translation of PA3215
                           337
                           97.92
                           98.51
                           0
                           1704.0
     

     
     
110474
                           gb|AAG06603.1|AE004744_18
                           (AE004744) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           337
                           97.92
                           98.51
                           0
                           1704.0
     

     
     
110475
                           gb|AAN70082.1|AE016647_12
                           (AE016790) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           354
                           65.53
                           75.42
                           18
                           1169.0
     

     






      

          
GC ORFID: 45094How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3215Glimmer Score: 

          
Start: 2984992Stop: 2983979

          
Length: 1014


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA3215 translation of PA3215Homolog Bit Score 660.0

          
Other Homologs:  t_PA3215 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGAACGTACAACCTTGTCCAGCTGGGTCCAGGGCATCGTCCTCGCCCTGGAGCTGGAAGGCCTCGAC 
GGACGCCAGCTGTTCGCCGAGCTGGGCCTCGACTACCAGGCCCTGCAGGACCCCGACGCGCGCTTCCCGCAG 
GATGCGATGAGCCGTCTGTGGCAGCGTGCGGTGGCGCTCAGCGGCAACCCGGCGATCGCCCTGAACATCGCC 
CGGGTCCGGCGCCCGGCTTTCCACGTCGTCGGCTATGCGCTGATGTCGAGCCGCAACCTGGCGGAAGGCTTC 
GCGCGCCTGGAACGCTACCAGCGGATCATCGCGGAAGCCTCCGACCTGACTTTCTGCCGCACGCCGCAGGGC 
TATCGACTCGGCGTCACGGTGCATGGTGATCGCCTGCCGGCGCCGCCGCAGAGTGCCGAATGCTCGCTGGCC 
TACCTGGTGGACATGGTCCGCTGGATCACCGGCCGGCCGCTGGACCCGCTGGCGGTGGAACTGCCCGGCGCG 
CCCCGCGAGCCGCTGGCACCCTATGCCGAGCTGTTCCGCGCGCCGCTGCGCTTTCACGCCGAGGAGTTCGCG 
CTGGTGTTTTCCCGCGTCGACCTCGAGACGCCGCTACCCTCGGCCAACGAGGCGCTGGCCCAGTTGCACGAT 
CGCTTCGCCGGCGAATACCTGGCGCGTTTCAGCACCAGCCGCATCACCCATCTGGCCCGGCAGACCCTGTGC 
CGGCTGTTGCCGCAGGGAGAACCCAAGCGCGAACGGGTGGCCCAGGCACTGCACCTGTCGCAGCGCACCTTG 
CAACGACGCCTCCAGGAGGAGGGCACCAGCTACCAGCAACTGCTCGACGACACACGTCGGGATATGGCCGAT 
CAGTATCTCCAGCAGCCCGGCCTGACCTTGCTGGAAGTCGCCTATCTGCTGGGTTTCGCCGATCCGAGCAAT 
TTCTTCCGGGCATTCCGCCGCTGGTTCGGCTGCACGCCCAACGAATACCGGGCGCGCCGCCAGGGGCGCCCG 
GGCTAG