ViewGene

Locus Name:
GeneID:
Location:

GeneID:2091
TrivialName: PA14_25990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25990
PAO1 Ortholog Locus:PA2942
Sequence Length:1014
Protein Length:337
Start: 2270442
Stop: 2271455
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06330.1|AE004720_6 (AE004720) probable magnesium chelatase [Pseudomonas aeruginosa PAO1]
Identities = 332/338 (98%), Positives = 334/338 (98%), Gaps = 1/338 (0%)
Sequence:
ATGAGCGCTACCGTGCATTACCCCCTGTCCGCCGTGGTCGCCGCCGACGAACTGAAGCTGGCGCTGTGCCTG
GCCGCGGTCGATCCGGCGATCGGCGGGGTACTGATCGAGGGGCCGCGCGGAATGGCCAAGTCGACCCTGGCG
CGGGGCGTCGCCGAACTGCTGCCGGCGGGCGAGTTCGTTACCCTGCCGCTGGGCGCCAGCGAGGAGCGCATC
GTCGGCAGCCTCGACCTGGACGCCGCCCTCGGCGAAGGTCGCGCGCGGTTTTCCCCGGGCGTGCTGGCCAAG
GCCGACGGCGGCGTGCTCTACGTCGACGAGGTGAACCTGCTACCGGACCACCTGGTGGATTTGTTGCTCGAC
GTCGCCGCCAGCGGCGTCAACCTGGTCGAGCGCGATGGCATTTCCCACCGGCATCCGGCGCGTTTCGTGCTG
ATCGGCACGATGAACCCGGAAGAGGGCGAACTGCGCCCGCAACTGCTCGACCGTTTCGGCCTCAACGTGCGC
CTCGACACCCAGCCGCCGCCGGCCGAGCGGGCAGAGATCATCCGTCGCCGGCTGGCCTTCGATGCCGACCCG
CAGGCCTTCGTCGAACGTTGGGAAGGCCAGCAGGACAACCTGCGCCGCCGTTGCGCCGAGGCACGCCGGCAA
CTGGCGCGGATTCCCCTGGACGATGCGGCGCTGGACAGCATCGCCCGACGCTGCTTCGAGGCGGCTGTCGAT
GGCCTGCGCGCCGACCTGGTCTGGCTGCGCGCGGCGCGCGCCCATGCGGCCTGGCGCGGCGGCGAGCGGATC
GAGGCGGAGGACATCGATGCGGTGGAACATTTCGCCCTGCTGCATCGCCGTCGCCAGTCGAGCCCGCCGCCA
TCGGCGGCCAATCCACCGCCACCGCCCGCGGCCCCTGCCGCGCTCCCGGAGCGCGCCGGCGACGGCGAAGGG
CAGTGGGGCGAATTGCCGGCTCGGCCGGTGGCCATGGGGACCGCCCGCGAGCTGCCGCGCTGGCCAAAAAAG
CCCTGA
Translation:
MSATVHYPLSAVVAADELKLALCLAAVDPAIGGVLIEGPRGMAKSTLARGVAELLPAGEFVTLPLGASEERI
VGSLDLDAALGEGRARFSPGVLAKADGGVLYVDEVNLLPDHLVDLLLDVAASGVNLVERDGISHRHPARFVL
IGTMNPEEGELRPQLLDRFGLNVRLDTQPPPAERAEIIRRRLAFDADPQAFVERWEGQQDNLRRRCAEARRQ
LARIPLDDAALDSIARRCFEAAVDGLRADLVWLRAARAHAAWRGGERIEAEDIDAVEHFALLHRRRQSSPPP
SAANPPPPPAAPAALPERAGDGEGQWGELPARPVAMGTARELPRWPKKP*
AnnotationID:2099GeneID:2091
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 13:01:35
Gene Name:
Confidence Code:3
GeneProduct:putative mMagnesium chelatase, subunit ChlI
Cell Localization:()
Synonyms:PA2942
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01078
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO56635.1| (AE016867) magnesium chelatase, subunit ChII, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 342

 Score =  481 bits (1238), Expect = e-135
 Identities = 240/337 (71%), Positives = 274/337 (81%), Gaps = 2/337 (0%)

>gb|AAN69107.1|AE016544_5 (AE016787) magnesium chelatase, subunit ChII [Pseudomonas putida
           KT2440]
          Length = 337

 Score =  460 bits (1183), Expect = e-129
 Identities = 239/339 (70%), Positives = 263/339 (77%), Gaps = 4/339 (1%)

>dbj|BAC18701.1| (AP005220) putative protoporphyrin IX magnesium chelatase
           [Corynebacterium efficiens YS-314]
          Length = 379

 Score =  301 bits (770), Expect = 5e-81
 Identities = 155/280 (55%), Positives = 193/280 (68%)
Structural Features:
pfam01078, Magnesium chelatase, subunit ChlI.
CD-Length = 325 residues,  99.1% aligned
Score =  222 bits (567), Expect = 5e-59
Identities = 135/324 (41%), Positives = 170/324 (52%), Gaps = 41/324 (12%)
Genomic Context:
Comment:
ReferenceID:4185
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21331
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36111
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2091_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2091

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3594 PA2942_tr translation of PA2942 338 98.22 98.81 1 1704.0
110428 gb|AAG06330.1|AE004720_6 (AE004720) probable magnesium chelatase [Pseudomonas aeruginosa PAO1] 338 98.22 98.81 1 1704.0
110430 gb|AAN69107.1|AE016544_5 (AE016787) magnesium chelatase, subunit ChII [Pseudomonas putida KT2440] 339 70.50 77.58 4 1188.0
110429 gb|AAO56635.1| (AE016867) magnesium chelatase, subunit ChII, putative [Pseudomonas syringae pv. tomato str. DC3000] 344 69.76 79.65 9 1240.0
110431 dbj|BAC18701.1| (AP005220) putative protoporphyrin IX magnesium chelatase [Corynebacterium efficiens YS-314] 387 43.66 55.29 58 759.0
GC ORFID: 45093How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2942Glimmer Score:
Start: 2683483Stop: 2682470
Length: 1014
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2942 translation of PA2942Homolog Bit Score 660.0
Other Homologs: psyr_15may02_Scaffold7_revised_gene7246 (ORF: BLASTX 490.0), t_PA2942 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGCTACCGTGCATTACCCCCTGTCCGCCGTGGTCGCCGCCGACGAACTGAAGCTGGCGCTGTGCCTG
GCCGCGGTCGATCCGGCGATCGGCGGGGTACTGATCGAGGGGCCGCGCGGAATGGCCAAGTCGACCCTGGCG
CGGGGCGTCGCCGAACTGCTGCCGGCGGGCGAGTTCGTTACCCTGCCGCTGGGCGCCAGCGAGGAGCGCATC
GTCGGCAGCCTCGACCTGGACGCCGCCCTCGGCGAAGGTCGCGCGCGGTTTTCCCCGGGCGTGCTGGCCAAG
GCCGACGGCGGCGTGCTCTACGTCGACGAGGTGAACCTGCTACCGGACCACCTGGTGGATTTGTTGCTCGAC
GTCGCCGCCAGCGGCGTCAACCTGGTCGAGCGCGATGGCATTTCCCACCGGCATCCGGCGCGTTTCGTGCTG
ATCGGCACGATGAACCCGGAAGAGGGCGAACTGCGCCCGCAACTGCTCGACCGTTTCGGCCTCAACGTGCGC
CTCGACACCCAGCCGCCGCCGGCCGAGCGGGCAGAGATCATCCGTCGCCGGCTGGCCTTCGATGCCGACCCG
CAGGCCTTCGTCGAACGTTGGGAAGGCCAGCAGGACAACCTGCGCCGCCGTTGCGCCGAGGCACGCCGGCAA
CTGGCGCGGATTCCCCTGGACGATGCGGCGCTGGACAGCATCGCCCGACGCTGCTTCGAGGCGGCTGTCGAT
GGCCTGCGCGCCGACCTGGTCTGGCTGCGCGCGGCGCGCGCCCATGCGGCCTGGCGCGGCGGCGAGCGGATC
GAGGCGGAGGACATCGATGCGGTGGAACATTTCGCCCTGCTGCATCGCCGTCGCCAGTCGAGCCCGCCGCCA
TCGGCGGCCAATCCACCGCCACCGCCCGCGGCCCCTGCCGCGCTCCCGGAGCGCGCCGGCGACGGCGAAGGG
CAGTGGGGCGAATTGCCGGCTCGGCCGGTGGCCATGGGGACCGCCCGCGAGCTGCCGCGCTGGCCAAAAAAG
CCCTGA