ViewGene
Locus Name:
GeneID:
Location:

GeneID:2090
TrivialName: PA14_27180
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27180
PAO1 Ortholog Locus:PA2854
Sequence Length:972
Protein Length:323
Start: 2361122
Stop: 2362093
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06242.1|AE004712_2 (AE004712) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 323/323 (100%), Positives = 323/323 (100%)
Sequence:
ATGTTGTCGCGCGTACCCGTTGTCTCACTGTCTTTCGCCGCGCTGCTTTCGGCCGGCTCCGCATCGGCCCTG
GAACTGCAGCTCCCGCCTCCGGGCGAGGACGTCGTCGGCCAGGTCCAGGTGATCAAGGCCAAGTACGAGGAC
ACGTTCGCCGACCTCGGCGAGCAGTACAACCTGGGCTACAGCGAAATGGTCGCCGCCAACCCGGGCGTCGAT
CCCTGGCTGCCGGGCGTCGGCACCGAGGTGATCATCCCGACCCGCTTCGTGCTGCCGCCTGGCCCGCGCGAA
GGCGTGGTGATCAACCTGGCCGAGTACCGCCTGTACTACTACCCGAAAGGGCAGAACGTGGTGCACACCTAT
CCGCTGGGCATCGGCCGCGAGGGCTGGGGTTCGCCGATCGCGAACACCCGCATCACTGCCAAGACCAAGGAC
CCGGCCTGGTATCCGCCGGCCTCGATCCGCGCCGAGCACGCCGCCGATGGCGATCCGCTGCCGACCGTGGTG
CCGCCGGGCCCGGACAATCCGCTGGGGCCGTACAAGCTGACCCTGGGCGTGCCGGGCTACCTGATCCATGGT
TCGAACAAGAAGTTCGGCATCGGCACCCGCACCAGCCATGGCTGCTTCCGCATGTACAACGCCGACGTGACC
CACCTGTTCTCGATGATCAGCGTCGGCACCAGCGTGCGTATCATCAACGAGCCCTACAAGTTCGGCGTGAGC
AACGGCAAGGTCTACCTGGAGGCGCATACGCCGCTGAACGACCATGGCGACCCGTCGGTGGTGGACAAGCAC
ACCGCGGTGATCAACACCCTGCTCAAGCGCGACGACCTGGCCAAGCGTATCCAGTTGAACTGGGACGTGGTC
CGCGAAGTGGTGGCCTCGGAGGATGGCGTGCCGGTGGAAATCGCCCAGGAATCGGCGCCGGCGATGACCGCG
ACGGTGGATAGCGATCCTACCCAGCTTACGCCCTGA
Translation:
MLSRVPVVSLSFAALLSAGSASALELQLPPPGEDVVGQVQVIKAKYEDTFADLGEQYNLGYSEMVAANPGVD
PWLPGVGTEVIIPTRFVLPPGPREGVVINLAEYRLYYYPKGQNVVHTYPLGIGREGWGSPIANTRITAKTKD
PAWYPPASIRAEHAADGDPLPTVVPPGPDNPLGPYKLTLGVPGYLIHGSNKKFGIGTRTSHGCFRMYNADVT
HLFSMISVGTSVRIINEPYKFGVSNGKVYLEAHTPLNDHGDPSVVDKHTAVINTLLKRDDLAKRIQLNWDVV
REVVASEDGVPVEIAQESAPAMTATVDSDPTQLTP*
AnnotationID:2098GeneID:2090
AnnotatorUID: diggins
Modification Date/Time: 2005-04-07 05:05:37
Gene Name:
Confidence Code:3
GeneProduct:putative ErfK/YbiS/YcfS/YnhG family protein
Cell Localization:()
Synonyms:erfK
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam03734
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55784.1| (AE016864) ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 321

 Score =  498 bits (1282), Expect = e-140
 Identities = 232/305 (76%), Positives = 268/305 (87%), Gaps = 2/305 (0%)








 
Structural Features:
pfam03734, ErfK_YbiS_YhnG, ErfK/YbiS/YcfS/YnhG
CD-Length = 127 residues, 100.0% aligned
Score =  139 bits (352), Expect = 4e-34
Identities = 59/138 (42%), Positives = 72/138 (52%), Gaps = 11/138 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4183




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21329




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36209




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2090_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2090
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3593
                           PA2854_tr
                           translation of PA2854
                           323
                           99.99
                           99.99
                           0
                           1704.0
     

     
     
110390
                           gb|AAG06242.1|AE004712_2
                           (AE004712) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           323
                           99.99
                           99.99
                           0
                           1704.0
     

     
     
110391
                           gb|AAN67933.1|AE016425_10
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           330
                           74.54
                           84.54
                           12
                           1304.0
     

     
     
110392
                           gb|AAO55784.1|
                           (AE016864) ErfK/YbiS/YcfS/YnhG family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           325
                           72.00
                           84.00
                           6
                           1282.0
     

     
     
110393
                           gb|AAO91074.1|
                           (AE016965) LysM domain protein [Coxiella burnetii RSA 493]
                           329
                           41.64
                           58.66
                           21
                           662.0
     

     






      

          
GC ORFID: 45092How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2854Glimmer Score: 

          
Start: 2592804Stop: 2591833

          
Length: 972


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2854 translation of PA2854Homolog Bit Score 660.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2187 (ORF: BLASTX 391.0), t_PA2854 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGTCGCGCGTACCCGTTGTCTCACTGTCTTTCGCCGCGCTGCTTTCGGCCGGCTCCGCATCGGCCCTG 
GAACTGCAGCTCCCGCCTCCGGGCGAGGACGTCGTCGGCCAGGTCCAGGTGATCAAGGCCAAGTACGAGGAC 
ACGTTCGCCGACCTCGGCGAGCAGTACAACCTGGGCTACAGCGAAATGGTCGCCGCCAACCCGGGCGTCGAT 
CCCTGGCTGCCGGGCGTCGGCACCGAGGTGATCATCCCGACCCGCTTCGTGCTGCCGCCTGGCCCGCGCGAA 
GGCGTGGTGATCAACCTGGCCGAGTACCGCCTGTACTACTACCCGAAAGGGCAGAACGTGGTGCACACCTAT 
CCGCTGGGCATCGGCCGCGAGGGCTGGGGTTCGCCGATCGCGAACACCCGCATCACTGCCAAGACCAAGGAC 
CCGGCCTGGTATCCGCCGGCCTCGATCCGCGCCGAGCACGCCGCCGATGGCGATCCGCTGCCGACCGTGGTG 
CCGCCGGGCCCGGACAATCCGCTGGGGCCGTACAAGCTGACCCTGGGCGTGCCGGGCTACCTGATCCATGGT 
TCGAACAAGAAGTTCGGCATCGGCACCCGCACCAGCCATGGCTGCTTCCGCATGTACAACGCCGACGTGACC 
CACCTGTTCTCGATGATCAGCGTCGGCACCAGCGTGCGTATCATCAACGAGCCCTACAAGTTCGGCGTGAGC 
AACGGCAAGGTCTACCTGGAGGCGCATACGCCGCTGAACGACCATGGCGACCCGTCGGTGGTGGACAAGCAC 
ACCGCGGTGATCAACACCCTGCTCAAGCGCGACGACCTGGCCAAGCGTATCCAGTTGAACTGGGACGTGGTC 
CGCGAAGTGGTGGCCTCGGAGGATGGCGTGCCGGTGGAAATCGCCCAGGAATCGGCGCCGGCGATGACCGCG 
ACGGTGGATAGCGATCCTACCCAGCTTACGCCCTGA