ViewGene

Locus Name:
GeneID:
Location:

GeneID:209
TrivialName: PA14_33820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33820
PAO1 Ortholog Locus:PA2385
Sequence Length:2289
Protein Length:762
Start: 3004988
Stop: 3007276
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05773.1|AE004664_10 (AE004664) probable acylase [Pseudomonas aeruginosa PAO1]
Identities = 761/762 (99%), Positives = 761/762 (99%)
Sequence:
ATGGGGATGCGTACCGTACTGACCGGCCTGGCCGGCATGCTGTTGGGTTCGATGATGCCGGTCCAGGCCGAT
ATGCCGCGGCCGACCGGGCTGGCCGCGGATATCCGCTGGACCGCCTATGGCGTGCCGCACATCCGGGCCAAG
GATGAGCGCGGCCTGGGCTATGGCATCGGCTACGCCTACGCGCGCGACAACGCCTGCCTGCTGGCCGAGGAG
ATCGTCACCGCGCGCGGCGAGCGGGCGCGCTATTTCGGCAGCGAGGGCAAGTCGTCGGCGGAGCTGGACAAC
CTGCCGTCCGACATCTTCTACGCCTGGCTCAACCAACCCGAGGCGCTGCAAGCCTTCTGGCAGGCGCAGACG
CCCGCGGTGCGCCAGTTGCTCGAAGGCTACGCCGCCGGTTTCAACCGCTTCCTCCGCGAGGCCGACGGCAAG
ACCACCAGTTGCCTTGGCCAGCCCTGGCTGCGGGCCATCGCGACCGATGACCTGCTGCGCCTGACCCGGCGC
CTGCTGGTCGAAGGCGGGGTCGGCCAGTTCGCCGACGCGCTGGTGGCCGCCGCGCCGCCCGGCACGGAGAAG
GTCGCCCTGAGCGGCGAGCAGGCGTTCCAGGTCGCCGAGCAGCGGCGCCAGCGCTTCCGCCTGGAGCGCGGC
AGCAACGCCATTGCCGTTGGCAGCGAACGTTCGGCGGACGGCAAGGGCATGCTCCTGGCCAACCCGCACTTC
CCCTGGAACGGCGCGATGCGTTTCTACCAGATGCACCTGACCATTCCCGGCCGGCTCGACGTGATGGGGGCC
TCGCTGCCCGGCCTGCCGGTGGTCAACATCGGCTTCAGCCGCCACCTGGCCTGGACCCACACGGTGGATACC
TCCAGCCACTTCACCCTGTATCGCCTGGCGCTGGACCCGAAGGACCCGCGGCGCTACTTGGTCGACGGTCGT
TCGCTGCCGCTGGAGGAGAAATCCGTCGCGATCGAGGTGCGCGGCGCCGACGGCAAGCTGTCGCGCGTCGAG
CACAAGGTCTACCAGTCGATCTACGGCCCGCTGGTGGTCTGGCCCGGCAAGCTGGACTGGAACCGCAGCGAG
GCCTATGCGCTGCGTGACGCCAACCTGGAGAACACCCGGGTACTGCAACAGTGGTACTCGATCAACCAGGCC
AGCGACGTCGCCGACCTGCGCCGGCGCGTCGAGGCGCTACAGGGGATCCCCTGGGTCAACACCCTGGCCGCG
GACGAGCAGGGCAACGCCCTGTACATGAACCAGTCGGTGGTGCCCTACCTGAAGCCGGAACTGATTCCCGCC
TGCGCCATTCCGCAACTGGTCGCCGAAGGCCTGCCGGCCCTCCAGGGGCAGGACAGCCGCTGTGCCTGGAGT
CGCGACCCGGCCGCGGCCCAGGCTGGCATCACCCCGGCGGCGCAACTGCCGGTGCTGTTGCGCAGGGACTTC
GTGCAGAACTCCAACGACAGCGCTTGGCTGACCAACCCGGCGAGCCCGCTGCAGGGCTTCTCGCCCCTGGTC
AGCCAGGAGAAGCCCATCGGTCCGCGGGCGCGCTACGCCCTGAGCCGGCTACAGGGCAAGCAGCCGCTGGAG
GCGAAGACGCTCGAGGAAATGGTCACCGCCAACCATGTCTTCAGCGCCGACCAGGTGCTGCCGGACCTGCTC
CGCCTGTGCCGCGACAACCAGGGCGAGAAGTCCCTTGCCCGCGCCTGCGCGGCCCTGGCGCAGTGGGACCGT
GGCGCCAACCTCGACAGCGGCAGCGGTTTCGTCTACTTCCAGCGCTTCATGCAACGCTTCGCCGAACTCGAC
GGCGCGTGGAAGGAACCGTTCGATGCGCAACGTCCCCTGGATACGCCGCAAGGCATCGCCCTCGACCGGCCG
CAGGTGGCGACCCAGGTGCGCCAGGCGCTGGCGGACGCGGCGGCGGAGGTGGAGAAGAGCGGGATTCCCGAC
GGCGCGCGCTGGGGCGACCTGCAAGTGAGCACCCGTGGCCAGGAACGCATCGCGATTCCCGGCGGCGATGGC
CATTTCGGGGTCTACAACGCGATCCAGAGCGTCCGCAAGGGCGACCACCTGGAGGTGGTCGGCGGCACCAGC
TACATCCAACTGGTGACCTTCCCCGAGGAAGGGCCCAAGGCTCGCGGGTTGCTGGCTTTCTCCCAGTCCAGC
GATCCGCGCTCGCCGCACTACCGCGACCAGACCGAGCTGTTTTCCCGCCAGCAATGGCAGACCTTGCCGTTC
AGCGACAGGCAGATCGACGCCGACCCGCAACTGCAACGGCTAAGCATTCGCGAATGA
Translation:
MGMRTVLTGLAGMLLGSMMPVQADMPRPTGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEE
IVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGK
TTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGTEKVALSGEQAFQVAEQRRQRFRLERG
SNAIAVGSERSADGKGMLLANPHFPWNGAMRFYQMHLTIPGRLDVMGASLPGLPVVNIGFSRHLAWTHTVDT
SSHFTLYRLALDPKDPRRYLVDGRSLPLEEKSVAIEVRGADGKLSRVEHKVYQSIYGPLVVWPGKLDWNRSE
AYALRDANLENTRVLQQWYSINQASDVADLRRRVEALQGIPWVNTLAADEQGNALYMNQSVVPYLKPELIPA
CAIPQLVAEGLPALQGQDSRCAWSRDPAAAQAGITPAAQLPVLLRRDFVQNSNDSAWLTNPASPLQGFSPLV
SQEKPIGPRARYALSRLQGKQPLEAKTLEEMVTANHVFSADQVLPDLLRLCRDNQGEKSLARACAALAQWDR
GANLDSGSGFVYFQRFMQRFAELDGAWKEPFDAQRPLDTPQGIALDRPQVATQVRQALADAAAEVEKSGIPD
GARWGDLQVSTRGQERIAIPGGDGHFGVYNAIQSVRKGDHLEVVGGTSYIQLVTFPEEGPKARGLLAFSQSS
DPRSPHYRDQTELFSRQQWQTLPFSDRQIDADPQLQRLSIRE*
AnnotationID:219GeneID:209
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 07:07:30
Gene Name:pvdQ
Confidence Code:1
GeneProduct:penicillin acylase-related protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(3) Antibiotic resistance and susceptibility
Alternate Gene Product Name:penicillin amidase family protein
Functional Category Confidence Code:5
COGs:pfam01804,COG2366
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO55678.1| (AE016863) penicillin amidase family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 773

 Score =  812 bits (2097), Expect = 0.0
 Identities = 415/767 (54%), Positives = 539/767 (70%), Gaps = 19/767 (2%)

Structural Features:
pfam01804, Penicil_amidase, Penicillin amidase.
CD-Length = 734 residues,  99.7% aligned
Score =  502 bits (1294), Expect = 5e-143
Identities = 229/774 (29%), Positives = 320/774 (41%), Gaps = 92/774 (11%)

COG2366, COG2366, Protein related to penicillin acylase 
CD-Length = 768 residues,  99.1% aligned
Score =  447 bits (1151), Expect = 2e-126
Identities = 202/809 (24%), Positives = 276/809 (34%), Gaps = 97/809 (11%)
Genomic Context:
Comment:
ReferenceID:421
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17563
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32925
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:209_cdd.html
URL:
ReferenceID:34483
Author/Investigator(s): Huang JJ, Han JI, Zhang LH, Leadbetter JR.
Title: Utilization of acyl-homoserine lactone quorum signals for growth by a soil pseudomonad and Pseudomonas aeruginosa PAO1.
PubMed: 14532048
MedLine:
Source:
Appl Environ Microbiol. 2003 Oct;69(10):5941-9.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14532048
Homologs By Global Alignment
Gene ID:209

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
359 PA2385_tr translation of PA2385 762 99.86 99.86 0 3963.0
21962 gb|AAG05773.1|AE004664_10 (AE004664) probable acylase [Pseudomonas aeruginosa PAO1] 762 99.86 99.86 0 3963.0
21963 gb|AAO55678.1| (AE016863) penicillin amidase family protein [Pseudomonas syringae pv. tomato str. DC3000] 782 53.96 69.56 29 2123.0
21964 gb|AAN68509.1|AE016482_11 (AE016784) penicillin amidase family protein [Pseudomonas putida KT2440] 786 52.54 67.55 38 2093.0
21966 gb|AAF12385.1|AE001863_10 (AE001863) aculeacin A acylase [Deinococcus radiodurans] [Deinococcus radiodurans R1] 811 39.58 55.73 75 1403.0
GC ORFID: 43211How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2385Glimmer Score:
Start: 1948928Stop: 1946640
Length: 2289
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2385 translation of PA2385Homolog Bit Score 1531.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene960 (ORF: BLASTX 828.0), t_PA2385 (ORF: GLIMMER)
GC ORF Sequence
ATGGGGATGCGTACCGTACTGACCGGCCTGGCCGGCATGCTGTTGGGTTCGATGATGCCGGTCCAGGCCGAT
ATGCCGCGGCCGACCGGGCTGGCCGCGGATATCCGCTGGACCGCCTATGGCGTGCCGCACATCCGGGCCAAG
GATGAGCGCGGCCTGGGCTATGGCATCGGCTACGCCTACGCGCGCGACAACGCCTGCCTGCTGGCCGAGGAG
ATCGTCACCGCGCGCGGCGAGCGGGCGCGCTATTTCGGCAGCGAGGGCAAGTCGTCGGCGGAGCTGGACAAC
CTGCCGTCCGACATCTTCTACGCCTGGCTCAACCAACCCGAGGCGCTGCAAGCCTTCTGGCAGGCGCAGACG
CCCGCGGTGCGCCAGTTGCTCGAAGGCTACGCCGCCGGTTTCAACCGCTTCCTCCGCGAGGCCGACGGCAAG
ACCACCAGTTGCCTTGGCCAGCCCTGGCTGCGGGCCATCGCGACCGATGACCTGCTGCGCCTGACCCGGCGC
CTGCTGGTCGAAGGCGGGGTCGGCCAGTTCGCCGACGCGCTGGTGGCCGCCGCGCCGCCCGGCACGGAGAAG
GTCGCCCTGAGCGGCGAGCAGGCGTTCCAGGTCGCCGAGCAGCGGCGCCAGCGCTTCCGCCTGGAGCGCGGC
AGCAACGCCATTGCCGTTGGCAGCGAACGTTCGGCGGACGGCAAGGGCATGCTCCTGGCCAACCCGCACTTC
CCCTGGAACGGCGCGATGCGTTTCTACCAGATGCACCTGACCATTCCCGGCCGGCTCGACGTGATGGGGGCC
TCGCTGCCCGGCCTGCCGGTGGTCAACATCGGCTTCAGCCGCCACCTGGCCTGGACCCACACGGTGGATACC
TCCAGCCACTTCACCCTGTATCGCCTGGCGCTGGACCCGAAGGACCCGCGGCGCTACTTGGTCGACGGTCGT
TCGCTGCCGCTGGAGGAGAAATCCGTCGCGATCGAGGTGCGCGGCGCCGACGGCAAGCTGTCGCGCGTCGAG
CACAAGGTCTACCAGTCGATCTACGGCCCGCTGGTGGTCTGGCCCGGCAAGCTGGACTGGAACCGCAGCGAG
GCCTATGCGCTGCGTGACGCCAACCTGGAGAACACCCGGGTACTGCAACAGTGGTACTCGATCAACCAGGCC
AGCGACGTCGCCGACCTGCGCCGGCGCGTCGAGGCGCTACAGGGGATCCCCTGGGTCAACACCCTGGCCGCG
GACGAGCAGGGCAACGCCCTGTACATGAACCAGTCGGTGGTGCCCTACCTGAAGCCGGAACTGATTCCCGCC
TGCGCCATTCCGCAACTGGTCGCCGAAGGCCTGCCGGCCCTCCAGGGGCAGGACAGCCGCTGTGCCTGGAGT
CGCGACCCGGCCGCGGCCCAGGCTGGCATCACCCCGGCGGCGCAACTGCCGGTGCTGTTGCGCAGGGACTTC
GTGCAGAACTCCAACGACAGCGCTTGGCTGACCAACCCGGCGAGCCCGCTGCAGGGCTTCTCGCCCCTGGTC
AGCCAGGAGAAGCCCATCGGTCCGCGGGCGCGCTACGCCCTGAGCCGGCTACAGGGCAAGCAGCCGCTGGAG
GCGAAGACGCTCGAGGAAATGGTCACCGCCAACCATGTCTTCAGCGCCGACCAGGTGCTGCCGGACCTGCTC
CGCCTGTGCCGCGACAACCAGGGCGAGAAGTCCCTTGCCCGCGCCTGCGCGGCCCTGGCGCAGTGGGACCGT
GGCGCCAACCTCGACAGCGGCAGCGGTTTCGTCTACTTCCAGCGCTTCATGCAACGCTTCGCCGAACTCGAC
GGCGCGTGGAAGGAACCGTTCGATGCGCAACGTCCCCTGGATACGCCGCAAGGCATCGCCCTCGACCGGCCG
CAGGTGGCGACCCAGGTGCGCCAGGCGCTGGCGGACGCGGCGGCGGAGGTGGAGAAGAGCGGGATTCCCGAC
GGCGCGCGCTGGGGCGACCTGCAAGTGAGCACCCGTGGCCAGGAACGCATCGCGATTCCCGGCGGCGATGGC
CATTTCGGGGTCTACAACGCGATCCAGAGCGTCCGCAAGGGCGACCACCTGGAGGTGGTCGGCGGCACCAGC
TACATCCAACTGGTGACCTTCCCCGAGGAAGGGCCCAAGGCTCGCGGGTTGCTGGCTTTCTCCCAGTCCAGC
GATCCGCGCTCGCCGCACTACCGCGACCAGACCGAGCTGTTTTCCCGCCAGCAATGGCAGACCTTGCCGTTC
AGCGACAGGCAGATCGACGCCGACCCGCAACTGCAACGGCTAAGCATTCGCGAATGA