ViewGene
Locus Name:
GeneID:
Location:

GeneID:2089
TrivialName: PA14_34660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34660
PAO1 Ortholog Locus:PA2320
Sequence Length:1032
Protein Length:343
Start: 3077787
Stop: 3078818
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05708.1|AE004658_2 (AE004658) transcriptional regulator GntR [Pseudomonas aeruginosa PAO1]
Identities = 342/343 (99%), Positives = 343/343 (100%)
Sequence:
ATGAGCATCACCAAGAACGACAAGAACACGCGAACCACCGGACGTCCCACCCTCAACGAAGTCGCGCGCCGC
GCCGGGGTCAGCCCGATCACCGCGTCGCGCGCGTTGCGCGGCGTCGCCAGCGTCGCCGAAGAACTGGCGCAG
AAGGTCCGCGACGCCGCCCGCGAACTCGGCTACGTGGCCAACCCCGCGGCGCGCGCGCTGGCCTCGGCGCAA
AGCCACAGCGTGGCGGTGCTGGTGCCGTCGCTGGCCAACCTGCTGTTCATCGAGACCCTCGAGGCGATCCAC
GCGGTACTGCGGCCGCAGGGCCTGGAGGTGCTGATCGGCAACTTTCACTACTCGCGCAACGAGGAAGAGGAC
CTGATCCGCAACTACCTGGCCTACCAGCCGCGCGGCCTGCTGCTGACCGGCTTCGAGCGCACCGAGAGCGCC
CGGCGGATGATCGAGGCCAGTGGCATTCCCTGCGTGTACATGATGGACCTGGACTCCGGCGCCGGGCTCAAT
TGCGTCGGCTTCTCCCAGTTGCGCGCCGGCGAGGCCGCTGCCGAGCACCTGCTGGCACGCGGCCGCAGGCGC
CTGGCCTACATCGGCGCCCAGCTCGACCAGCGCACCCTGCTGCGCGGCGAGGGGTTCCGCCGCGCCTTGCAA
AAAGCCGGCTGCTACGACCCGGGGCTGGAAATCCTTACGCCGCGGCCGTCCTCGGTGGCCCTCGGCGGCGAA
CTCTTCGTGCAGTTGCTGGCCAGCCAGCCGCAGGTCGACGGGGTGTTCTTCTGCAACGACGACCTGGCCCAG
GGCGCGCTGTTGGAGGCCCTGCGCCGTGGGGTCAAGGTGCCGGAACAGATCGCCGTGCTCGGTTTCAACGAC
CTGCCGGGTTCGGACTGCACGGTCCCGCGCCTGAGCAGCATCCGCACCCCGCGCGAAGCCATCGGCCGGCGC
GCGGCGGAGCAGTTGCTGGCGCTGATCGCCGGCAAGGAGGTGCGCGATAGCGCGCTGGACATGGGGTTCGAG
CTGATGGCGCGGGAGAGCACCTGA
Translation:
MSITKNDKNTRTTGRPTLNEVARRAGVSPITASRALRGVASVAEELAQKVRDAARELGYVANPAARALASAQ
SHSVAVLVPSLANLLFIETLEAIHAVLRPQGLEVLIGNFHYSRNEEEDLIRNYLAYQPRGLLLTGFERTESA
RRMIEASGIPCVYMMDLDSGAGLNCVGFSQLRAGEAAAEHLLARGRRRLAYIGAQLDQRTLLRGEGFRRALQ
KAGCYDPGLEILTPRPSSVALGGELFVQLLASQPQVDGVFFCNDDLAQGALLEALRRGVKVPEQIAVLGFND
LPGSDCTVPRLSSIRTPREAIGRRAAEQLLALIAGKEVRDSALDMGFELMAREST*
AnnotationID:2097GeneID:2089
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 16:04:38
Gene Name:gntR
Confidence Code:2
GeneProduct:transcriptional regulator GntR
Cell Localization:()
Synonyms:gnuR
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:gluconate repressor
Functional Category Confidence Code:5
COGs:COG1609
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4181




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17022




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA2320_CDS.cgi


    		




 
URL:

















    ReferenceID:21327




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2089
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3592
                           PA2320_tr
                           translation of PA2320
                           343
                           99.70
                           99.99
                           0
                           1704.0
     

     
     
110382
                           gb|AAG05708.1|AE004658_2
                           (AE004658) transcriptional regulator GntR [Pseudomonas aeruginosa PAO1]
                           343
                           99.70
                           99.99
                           0
                           1704.0
     

     
     
110383
                           gb|AAD01801.1|
                           (AF026470) gluconate repressor [Pseudomonas aeruginosa]
                           343
                           83.96
                           84.83
                           26
                           1393.0
     

     
     
110384
                           gb|AAN69017.1|AE016533_9
                           (AE016786) transcriptional regulator, LacI family [Pseudomonas putida KT2440]
                           343
                           66.18
                           80.46
                           4
                           1128.0
     

     
     
110385
                           gb|AAO57037.1|
                           (AE016868) gluconate utilization system GNT-I transcriptional repressor [Pseudomonas syringae pv. tomato str. DC3000]
                           343
                           63.26
                           79.59
                           5
                           1086.0
     

     






      

          
GC ORFID: 45091How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2320Glimmer Score: 

          
Start: 1876129Stop: 1875098

          
Length: 1032


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2320 translation of PA2320Homolog Bit Score 660.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8011 (ORF: BLASTX 432.0), t_PA2320 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCATCACCAAGAACGACAAGAACACGCGAACCACCGGACGTCCCACCCTCAACGAAGTCGCGCGCCGC 
GCCGGGGTCAGCCCGATCACCGCGTCGCGCGCGTTGCGCGGCGTCGCCAGCGTCGCCGAAGAACTGGCGCAG 
AAGGTCCGCGACGCCGCCCGCGAACTCGGCTACGTGGCCAACCCCGCGGCGCGCGCGCTGGCCTCGGCGCAA 
AGCCACAGCGTGGCGGTGCTGGTGCCGTCGCTGGCCAACCTGCTGTTCATCGAGACCCTCGAGGCGATCCAC 
GCGGTACTGCGGCCGCAGGGCCTGGAGGTGCTGATCGGCAACTTTCACTACTCGCGCAACGAGGAAGAGGAC 
CTGATCCGCAACTACCTGGCCTACCAGCCGCGCGGCCTGCTGCTGACCGGCTTCGAGCGCACCGAGAGCGCC 
CGGCGGATGATCGAGGCCAGTGGCATTCCCTGCGTGTACATGATGGACCTGGACTCCGGCGCCGGGCTCAAT 
TGCGTCGGCTTCTCCCAGTTGCGCGCCGGCGAGGCCGCTGCCGAGCACCTGCTGGCACGCGGCCGCAGGCGC 
CTGGCCTACATCGGCGCCCAGCTCGACCAGCGCACCCTGCTGCGCGGCGAGGGGTTCCGCCGCGCCTTGCAA 
AAAGCCGGCTGCTACGACCCGGGGCTGGAAATCCTTACGCCGCGGCCGTCCTCGGTGGCCCTCGGCGGCGAA 
CTCTTCGTGCAGTTGCTGGCCAGCCAGCCGCAGGTCGACGGGGTGTTCTTCTGCAACGACGACCTGGCCCAG 
GGCGCGCTGTTGGAGGCCCTGCGCCGTGGGGTCAAGGTGCCGGAACAGATCGCCGTGCTCGGTTTCAACGAC 
CTGCCGGGTTCGGACTGCACGGTCCCGCGCCTGAGCAGCATCCGCACCCCGCGCGAAGCCATCGGCCGGCGC 
GCGGCGGAGCAGTTGCTGGCGCTGATCGCCGGCAAGGAGGTGCGCGATAGCGCGCTGGACATGGGGTTCGAG 
CTGATGGCGCGGGAGAGCACCTGA