ViewGene
Locus Name:
GeneID:
Location:

GeneID:2088
TrivialName: PA14_39530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_39530
PAO1 Ortholog Locus:PA1932
Sequence Length:990
Protein Length:329
Start: 3520195
Stop: 3519206
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05320.1|AE004619_7 (AE004619) probable hydroxylase molybdopterin-containing subunit [Pseudomonas aeruginosa PAO1]
Identities = 329/329 (100%), Positives = 329/329 (100%)
Sequence:
ATGACGCCCTTCGCCTATGCCAAGCCGGCCGACATCGAGCAGGCGCTGGGCCTCGCCGGCCCGGAGTCGCGC
TACATCGCCGGCGGCACCAACCTGCTCGACCTGATGAAGGAAAACGTTGCCAGGCCCCGGCGACTCATCGAC
ATCACCGGCCTCCCGCTGCGCGACATCCGCCGGACGCCCACCGGCGGCCTGCTGGTCGGAGCCCTGGTCAGC
AACGCCGAACTGGCCTGGAATCCCGCCGTGGAGGCGGACTATCCCTTGCTAGCCCAGGCGATCCTCGCCGGC
GCATCGCCGCAGTTGCGCAACATGGCCAGCACCGGCGGCAACCTGTTGCAGCGTACCCGCTGCCAGTATTTC
TACGACACCGGCACGCCATGCAACAAGCGCGAGCCGGGCAGCGGATGCCCCGCGCGCAGCGGGCTGAACCGC
AACCATGCGATCCTCGGCGCCAGCGAACACTGCGTGGCGGTACATCCATCCGACCTGTGCGTGGCGCTGGCG
GCGCTGGAGGCTCAGGTACTGGTGCGCGGCCGCGCTGGCGAGCGGCGGGTCGCTTTCGCCGACTTCCATCGC
CTGCCGGCGGACACGCCCGAGCGCGACAACTGCCTGGCCGTCGACGAACTGGTCACCGCCATCGAGCTGCCA
GCGCCGCGCTTCGCGCGGCATTGCCACTACCTGAAGGTGCGCGACCGGGCCTCCTACGCCTTCGCCCTGGTC
TCGGTGGCGGCGGCCCTGGAACCGGACGGCGAGCGCATTGGCGAACTGCGCCTGGCGCTCGGCGGCGTGGCC
CACAAGCCATGGCGCGTCGCAGAGCTGGAGGAACGTTTCAGGGGCCACCCGGCGAACCGGGACAGCTATGTC
CGCTTCGCCGAAGCGCTGCTGCGTGACGCCAGGCCGCTGGCCCACAACGCCTTCAAGATCGGATTGGCGCGC
AACGCCATCGTTCGCGCACTGGAAGAAGCCCACTCGGGAGGGATCGGCCAATGA
Translation:
MTPFAYAKPADIEQALGLAGPESRYIAGGTNLLDLMKENVARPRRLIDITGLPLRDIRRTPTGGLLVGALVS
NAELAWNPAVEADYPLLAQAILAGASPQLRNMASTGGNLLQRTRCQYFYDTGTPCNKREPGSGCPARSGLNR
NHAILGASEHCVAVHPSDLCVALAALEAQVLVRGRAGERRVAFADFHRLPADTPERDNCLAVDELVTAIELP
APRFARHCHYLKVRDRASYAFALVSVAAALEPDGERIGELRLALGGVAHKPWRVAELEERFRGHPANRDSYV
RFAEALLRDARPLAHNAFKIGLARNAIVRALEEAHSGGIGQ*
AnnotationID:2096GeneID:2088
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 12:12:05
Gene Name:
Confidence Code:3
GeneProduct:putative hydroxylase molybdopterin-containing subunit
Cell Localization:()
Synonyms:PA1932
Cell Localization Confidence Code:5
MolecularFunction:putative oxidoreductase, molybdopterin-binding subunit
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1319
Secondary Functional Category(ies):carbon compound catabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58097.1| (AE016872) oxidoreductase, molybdopterin-binding subunit
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 329

 Score =  464 bits (1195), Expect = e-130
 Identities = 223/329 (67%), Positives = 268/329 (81%)

>gb|AAN68916.1|AE016523_5 (AE016786) oxidoreductase, molybdopterin-binding subunit
           [Pseudomonas putida KT2440]
          Length = 333

 Score =  446 bits (1146), Expect = e-124

>gb|AAM36060.1| (AE011748) hydroxylase molybdopterin-containing subunit
           [Xanthomonas axonopodis pv. citri str. 306]
          Length = 354

 Score =  373 bits (958), Expect = e-103
 Identities = 197/341 (57%), Positives = 236/341 (69%), Gaps = 14/341 (4%)








 
Structural Features:
COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs 
[Energy production and conversion]
CD-Length = 284 residues,  99.6% aligned
Score =  252 bits (646), Expect = 3e-68
Identities = 130/333 (39%), Positives = 174/333 (52%), Gaps = 57/333 (17%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4179




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21325




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32780




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2088_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2088
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3591
                           PA1932_tr
                           translation of PA1932
                           329
                           99.99
                           99.99
                           0
                           1702.0
     

     
     
110353
                           gb|AAG05320.1|AE004619_7
                           (AE004619) probable hydroxylase molybdopterin-containing subunit [Pseudomonas aeruginosa PAO1]
                           329
                           99.99
                           99.99
                           0
                           1702.0
     

     
     
110354
                           gb|AAO58097.1|
                           (AE016872) oxidoreductase, molybdopterin-binding subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           329
                           67.78
                           81.45
                           0
                           1195.0
     

     
     
110355
                           gb|AAN68916.1|AE016523_5
                           (AE016786) oxidoreductase, molybdopterin-binding subunit [Pseudomonas putida KT2440]
                           333
                           67.56
                           77.47
                           4
                           1142.0
     

     
     
110356
                           dbj|BAC50475.1|
                           (AP005954) oxidoreductase [Bradyrhizobium japonicum USDA 110]
                           338
                           58.57
                           69.23
                           9
                           956.0
     

     






      

          
GC ORFID: 45090How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1932Glimmer Score: 

          
Start: 1433716Stop: 1434705

          
Length: 990


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1932 translation of PA1932Homolog Bit Score 660.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5393 (ORF: BLASTX 466.0), psyr_15may02_Scaffold7_revised_gene7485 (ORF: BLASTX 319.0), t_PA1932 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGCCCTTCGCCTATGCCAAGCCGGCCGACATCGAGCAGGCGCTGGGCCTCGCCGGCCCGGAGTCGCGC 
TACATCGCCGGCGGCACCAACCTGCTCGACCTGATGAAGGAAAACGTTGCCAGGCCCCGGCGACTCATCGAC 
ATCACCGGCCTCCCGCTGCGCGACATCCGCCGGACGCCCACCGGCGGCCTGCTGGTCGGAGCCCTGGTCAGC 
AACGCCGAACTGGCCTGGAATCCCGCCGTGGAGGCGGACTATCCCTTGCTAGCCCAGGCGATCCTCGCCGGC 
GCATCGCCGCAGTTGCGCAACATGGCCAGCACCGGCGGCAACCTGTTGCAGCGTACCCGCTGCCAGTATTTC 
TACGACACCGGCACGCCATGCAACAAGCGCGAGCCGGGCAGCGGATGCCCCGCGCGCAGCGGGCTGAACCGC 
AACCATGCGATCCTCGGCGCCAGCGAACACTGCGTGGCGGTACATCCATCCGACCTGTGCGTGGCGCTGGCG 
GCGCTGGAGGCTCAGGTACTGGTGCGCGGCCGCGCTGGCGAGCGGCGGGTCGCTTTCGCCGACTTCCATCGC 
CTGCCGGCGGACACGCCCGAGCGCGACAACTGCCTGGCCGTCGACGAACTGGTCACCGCCATCGAGCTGCCA 
GCGCCGCGCTTCGCGCGGCATTGCCACTACCTGAAGGTGCGCGACCGGGCCTCCTACGCCTTCGCCCTGGTC 
TCGGTGGCGGCGGCCCTGGAACCGGACGGCGAGCGCATTGGCGAACTGCGCCTGGCGCTCGGCGGCGTGGCC 
CACAAGCCATGGCGCGTCGCAGAGCTGGAGGAACGTTTCAGGGGCCACCCGGCGAACCGGGACAGCTATGTC 
CGCTTCGCCGAAGCGCTGCTGCGTGACGCCAGGCCGCTGGCCCACAACGCCTTCAAGATCGGATTGGCGCGC 
AACGCCATCGTTCGCGCACTGGAAGAAGCCCACTCGGGAGGGATCGGCCAATGA