ViewGene
Locus Name:
GeneID:
Location:

GeneID:2087
TrivialName: PA14_41730
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_41730
PAO1 Ortholog Locus:PA1766
Sequence Length:984
Protein Length:327
Start: 3723992
Stop: 3724975
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05155.1|AE004602_6 (AE004602) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 327/327 (100%), Positives = 327/327 (100%)
Sequence:
ATGTCGATCTGGAAGACCTGGAAAGACCTGACCGCGAAAGGCGTGATGGGCATCAACCGACGCAATGCCGAT
TACGTCCTGAAGTACAACAAGCGGCACCTGTATCCGGTGGTGGACGACAAGATCATCACCAAGGAACGCGCG
CTCGAGGCCGGCATCCACGTGCCGGAGATGTACGGCATCATCGAGACCGAGAAAGGCATCGACAAGCTCAAC
GAGATCATCGGCGAGCACAACGATTTCGTCATCAAGCCGGCGCAGGGCGCCGGCGGCGACGGCATCATGGTG
ATCGCCGACCGCTTCGAGGGCCGCTACAAGACCGTATCGGGGAAGATCGTCAGCCACGAGGAGATCGAGCAC
CACATCTCGAGCATCCTCTCCGGCCTCTACTCCCTCGGCGGCCATCGCGACCGCGTACTGATCGAGTACCGG
GTGACCCCCGACCAGATCTTCAAGAGCATCAGCTACGAAGGTGTCCCGGACATCCGCATCATCGTACTGATG
GGCTACCCGGTAATGGCCATGCTGCGCCTGCCGACCCGGCAGTCGGGCGGCAAGGCCAACCTGCACCAGGGC
GCCATCGGCGTGGGCGTCGACCTGGCCACCGGCGTCACCCTGCGCGGCACCTGGCTGAACAACAAGATCGCC
AAGCACCCGGACACCACCAACGCGGTGGACGGCGTGCAACTGCCGAACTGGGACGGCTTCATGAAGCTGGCG
GCCGGTTGCTACGAGTTGTCGGGCCTCGGCTACATCGGCGTGGACATGGTTCTCGACCAGGAGAAAGGCCCG
CTGATCCTCGAACTCAACGCCCGCCCGGGCCTGAACATCCAGATCGCCAACGACAGCGGCCTGGTGCACCGC
TGCCACGCCGTCGAGGCGCGACTGGAAGAACTCAAGGCGAAAGGCATCGAAGAGTCCGCGGAAGAGCGCGTA
CGCTTCTCCCAGCAGTTGTTCGGCCACGTCCAGCAGCACCAGGGCTGA
Translation:
MSIWKTWKDLTAKGVMGINRRNADYVLKYNKRHLYPVVDDKIITKERALEAGIHVPEMYGIIETEKGIDKLN
EIIGEHNDFVIKPAQGAGGDGIMVIADRFEGRYKTVSGKIVSHEEIEHHISSILSGLYSLGGHRDRVLIEYR
VTPDQIFKSISYEGVPDIRIIVLMGYPVMAMLRLPTRQSGGKANLHQGAIGVGVDLATGVTLRGTWLNNKIA
KHPDTTNAVDGVQLPNWDGFMKLAAGCYELSGLGYIGVDMVLDQEKGPLILELNARPGLNIQIANDSGLVHR
CHAVEARLEELKAKGIEESAEERVRFSQQLFGHVQQHQG*
AnnotationID:2095GeneID:2087
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 08:08:00
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1766
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4177




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21323




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37082




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2087_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2087
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3590
                           PA1766_tr
                           translation of PA1766
                           327
                           99.99
                           99.99
                           0
                           1704.0
     

     
     
110345
                           gb|AAG05155.1|AE004602_6
                           (AE004602) hypothetical protein PA1766 [Pseudomonas aeruginosa PAO1]
                           327
                           99.99
                           99.99
                           0
                           1704.0
     

     
     
110346
                           gb|AAN67943.1|AE016426_8
                           (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440]
                           328
                           83.84
                           90.24
                           3
                           1442.0
     

     
     
110347
                           gb|AAO55797.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           328
                           82.92
                           89.93
                           3
                           1424.0
     

     
     
110348
                           emb|CAD84208.1|
                           (BX321857) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           327
                           51.37
                           69.11
                           11
                           872.0
     

     






      

          
GC ORFID: 45089How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1766Glimmer Score: 

          
Start: 1229917Stop: 1228934

          
Length: 984


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1766 translation of PA1766Homolog Bit Score 660.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene377 (ORF: BLASTX 555.0), t_PA1766 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGATCTGGAAGACCTGGAAAGACCTGACCGCGAAAGGCGTGATGGGCATCAACCGACGCAATGCCGAT 
TACGTCCTGAAGTACAACAAGCGGCACCTGTATCCGGTGGTGGACGACAAGATCATCACCAAGGAACGCGCG 
CTCGAGGCCGGCATCCACGTGCCGGAGATGTACGGCATCATCGAGACCGAGAAAGGCATCGACAAGCTCAAC 
GAGATCATCGGCGAGCACAACGATTTCGTCATCAAGCCGGCGCAGGGCGCCGGCGGCGACGGCATCATGGTG 
ATCGCCGACCGCTTCGAGGGCCGCTACAAGACCGTATCGGGGAAGATCGTCAGCCACGAGGAGATCGAGCAC 
CACATCTCGAGCATCCTCTCCGGCCTCTACTCCCTCGGCGGCCATCGCGACCGCGTACTGATCGAGTACCGG 
GTGACCCCCGACCAGATCTTCAAGAGCATCAGCTACGAAGGTGTCCCGGACATCCGCATCATCGTACTGATG 
GGCTACCCGGTAATGGCCATGCTGCGCCTGCCGACCCGGCAGTCGGGCGGCAAGGCCAACCTGCACCAGGGC 
GCCATCGGCGTGGGCGTCGACCTGGCCACCGGCGTCACCCTGCGCGGCACCTGGCTGAACAACAAGATCGCC 
AAGCACCCGGACACCACCAACGCGGTGGACGGCGTGCAACTGCCGAACTGGGACGGCTTCATGAAGCTGGCG 
GCCGGTTGCTACGAGTTGTCGGGCCTCGGCTACATCGGCGTGGACATGGTTCTCGACCAGGAGAAAGGCCCG 
CTGATCCTCGAACTCAACGCCCGCCCGGGCCTGAACATCCAGATCGCCAACGACAGCGGCCTGGTGCACCGC 
TGCCACGCCGTCGAGGCGCGACTGGAAGAACTCAAGGCGAAAGGCATCGAAGAGTCCGCGGAAGAGCGCGTA 
CGCTTCTCCCAGCAGTTGTTCGGCCACGTCCAGCAGCACCAGGGCTGA