ViewGene

Locus Name:
GeneID:
Location:

GeneID:2086
TrivialName: PA14_71170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_71170
PAO1 Ortholog Locus:PA5389
Sequence Length:1011
Protein Length:336
Start: 6339923
Stop: 6340933
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08774.1|AE004951_8 (AE004951) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 335/336 (99%), Positives = 335/336 (99%)
Sequence:
ATGTCCCAGGACTTCTGGTTTCTCCTGCTGCCCGGCTTCTCGGTAATGGGCTTCGTTTCCGCCGTGGAGCCA
CTGCGCGTGGCCAACCGCTTCCACGCCGACCTCTACCGCTGGCACGTGCTCAGCGCCGACGGCGGTCCGGTG
CTGGCCAGCAATGGCATGTCGGTGAACAGCGACGGCGCGCTGGAGCCGCTGAAGAAAGGAGACCTGCTGTTC
GTGGTGGCCGGTTTCGAGCCGCTGCGGGCGGTCACCCCGGCACTGGTGCAGTGGCTGCGCAAGCTCGATCGC
AACGGCGTGACCCTCGGTGGCATCGATACCGGCAGCGTGGTGCTGGCCGAGGCCGGTCTGCTCGACGGGCGC
CGCGCGACCCTGCACTGGGAAGCCATCGACGCCTTCCAGGAGTCCTACCCGCAACTGAGCGTGACCCAGGAG
CTGTTCGAGATCGACGGTCCGCGCATCACCTCGGCCGGCGGCACCGCCTCCATCGACCTGATGCTCGACCTG
ATCGCCCAGGCCCACGGTCCGCAACTGGCGGTGCAGGTTTCCGAGCAGTTCGTGCTCGGCCGCATCCGCCCG
CGCCAGGACCACCAGCGCCTGCAGGTGGCGACCCGCTATGGCGTGAGCAACCGCAAGCTGGTGCAGGTGATC
GGCGAGATGGAGCGGCATACCGAGCCGCCACTGACCACCCTGGAGCTGGCCGAGCGCATCCAGGTCACCCGC
CGCCAGCTGGAACGGCTGTTCCGCGTGCACCTGGACGACACGCCCTCGAACTTCTACCTCGGCCTGCGCCTG
GACAAGGCCCGCCAGTTGCTGCGCCAGACCGACCTCAGCGTGCTACAGGTGAGCCTGGCCTGCGGCTTCGAG
TCGCCTTCGTACTTCTCCCGCAGCTACCGCGCGCGCTTCGCCGCCAGTCCCAGCCAGGACCGCGCGGTGCTG
CCGCTCAAGGCTCCCGCAGCCACGCCGCCAGGCGCGCCAGCAGGGCGTCGCACGCCTCGAGCTGAGCGAGGC
TGA
Translation:
MSQDFWFLLLPGFSVMGFVSAVEPLRVANRFHADLYRWHVLSADGGPVLASNGMSVNSDGALEPLKKGDLLF
VVAGFEPLRAVTPALVQWLRKLDRNGVTLGGIDTGSVVLAEAGLLDGRRATLHWEAIDAFQESYPQLSVTQE
LFEIDGPRITSAGGTASIDLMLDLIAQAHGPQLAVQVSEQFVLGRIRPRQDHQRLQVATRYGVSNRKLVQVI
GEMERHTEPPLTTLELAERIQVTRRQLERLFRVHLDDTPSNFYLGLRLDKARQLLRQTDLSVLQVSLACGFE
SPSYFSRSYRARFAASPSQDRAVLPLKAPAATPPGAPAGRRTPRAERG*
AnnotationID:2094GeneID:2086
AnnotatorUID: diggins
Modification Date/Time: 2005-03-17 09:09:56
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA5389
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN65936.1|AE016221_8 (AE016775) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 319

 Score =  430 bits (1106), Expect = e-120
 Identities = 217/309 (70%), Positives = 251/309 (81%)

>emb|CAD17205.1| (AL646076) PROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION
           REGULATOR PROTEIN [Ralstonia solanacearum]
          Length = 343

 Score =  265 bits (676), Expect = 4e-70
 Identities = 137/327 (41%), Positives = 212/327 (64%), Gaps = 5/327 (1%)

Structural Features:
COG4977, Transcriptional regulator containing an amidase domain 
and an AraC-type DNA-binding HTH domain [Transcription]
CD-Length = 328 residues,  97.6% aligned
Score =  347 bits (891), Expect = 1e-96
Identities = 166/320 (51%), Positives = 213/320 (66%), Gaps = 2/320 (0%)

Genomic Context:
Comment:
ReferenceID:4175
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21321
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34673
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2086_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2086

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3587 PA5389_tr translation of PA5389 336 99.70 99.70 0 1706.0
110324 gb|AAG08774.1|AE004951_8 (AE004951) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 336 99.70 99.70 0 1706.0
110325 gb|AAN65936.1|AE016221_8 (AE016775) transcriptional regulator, AraC family [Pseudomonas putida KT2440] 340 64.41 74.70 25 1104.0
110326 emb|CAD17205.1| (AL646076) PROBABLE TRANSCRIPTIONAL REGULATOR TRANSCRIPTION REGULATOR PROTEIN [Ralstonia solanacearum] 348 40.80 62.06 17 675.0
110338 gb|AAQ60757.2| (AE016921) transcriptional regulator (AraC-type DNA-binding domain-containing proteins) [Chromobacterium violaceum ATCC 12472] 345 40.00 54.78 23 579.0
GC ORFID: 45088How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5389Glimmer Score:
Start: 5603612Stop: 5604622
Length: 1011
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5389 translation of PA5389Homolog Bit Score 661.0
Other Homologs: t_PA5380 (ORF: BLASTX 264.0), psyr_15may02_Scaffold8_revised_gene7813 (ORF: BLASTX 223.0), t_PA0893 (ORF: BLASTX 216.0), t_PA5389 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCCAGGACTTCTGGTTTCTCCTGCTGCCCGGCTTCTCGGTAATGGGCTTCGTTTCCGCCGTGGAGCCA
CTGCGCGTGGCCAACCGCTTCCACGCCGACCTCTACCGCTGGCACGTGCTCAGCGCCGACGGCGGTCCGGTG
CTGGCCAGCAATGGCATGTCGGTGAACAGCGACGGCGCGCTGGAGCCGCTGAAGAAAGGAGACCTGCTGTTC
GTGGTGGCCGGTTTCGAGCCGCTGCGGGCGGTCACCCCGGCACTGGTGCAGTGGCTGCGCAAGCTCGATCGC
AACGGCGTGACCCTCGGTGGCATCGATACCGGCAGCGTGGTGCTGGCCGAGGCCGGTCTGCTCGACGGGCGC
CGCGCGACCCTGCACTGGGAAGCCATCGACGCCTTCCAGGAGTCCTACCCGCAACTGAGCGTGACCCAGGAG
CTGTTCGAGATCGACGGTCCGCGCATCACCTCGGCCGGCGGCACCGCCTCCATCGACCTGATGCTCGACCTG
ATCGCCCAGGCCCACGGTCCGCAACTGGCGGTGCAGGTTTCCGAGCAGTTCGTGCTCGGCCGCATCCGCCCG
CGCCAGGACCACCAGCGCCTGCAGGTGGCGACCCGCTATGGCGTGAGCAACCGCAAGCTGGTGCAGGTGATC
GGCGAGATGGAGCGGCATACCGAGCCGCCACTGACCACCCTGGAGCTGGCCGAGCGCATCCAGGTCACCCGC
CGCCAGCTGGAACGGCTGTTCCGCGTGCACCTGGACGACACGCCCTCGAACTTCTACCTCGGCCTGCGCCTG
GACAAGGCCCGCCAGTTGCTGCGCCAGACCGACCTCAGCGTGCTACAGGTGAGCCTGGCCTGCGGCTTCGAG
TCGCCTTCGTACTTCTCCCGCAGCTACCGCGCGCGCTTCGCCGCCAGTCCCAGCCAGGACCGCGCGGTGCTG
CCGCTCAAGGCTCCCGCAGCCACGCCGCCAGGCGCGCCAGCAGGGCGTCGCACGCCTCGAGCTGAGCGAGGC
TGA