ViewGene
Locus Name:
GeneID:
Location:

GeneID:2084
TrivialName: PA14_63280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_63280
PAO1 Ortholog Locus:PA4787
Sequence Length:1002
Protein Length:333
Start: 5648325
Stop: 5647324
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08173.1|AE004892_4 (AE004892) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 333/333 (100%), Positives = 333/333 (100%)
Sequence:
ATGCGTGATCTGACCGACGATGTAGCGCTGATGCGCCCGGTGATCGACGCCCTGCGCGCCAGcGGCTGCGAT
CCGGACCGGGTCCTGGTCCGTGTCGGGCTGCCGCCGGGTGGCCTGCCGGCCGGCCGTTTCCCCCATTCCGCA
CAGAACCTGTTCTGGAAGGCCGCCGCCGACGAGTGCGGCGAAGAGCATGTCGGCCTGCACCTGGCCGAGCAC
CTGCCGGCGTTCCACGGCCTGCTCCTGGAATACCTGTTCCTTTCCAGCGATACCTTCGGCGCCGGCCTGCGC
CATTCCCTGCGCTACGTACGCCTGCTGTCCGACACCCTGCAGGCGCAACTGGAGGTGGAGGGCGAGCGCGCG
GTGCTGTCGCTGGGCGAATCGCCGGCGATCAACCGTCACTTCCCGGAAATGCTCGCCGGCGCGGTGATCCGC
CTGTTCGGCGCGCTCACCGAGGGCGAGTTCAAGCCGCTGGAAGTGCAACTGATGAACGAAACCGGCGCGCCG
ATGGAGCGCTACCGTGCGGTCTACGGCTGCCCGACGATCCTCGGCATGCCGCGCTACGCGCTGGTATTCGAT
GCCGCGGTGCTGGACAAACCCTCGCGCCACGCCGCCCCGGAACTGCTGCGCATGCATGAGTCGCTGGCGCGC
CGGCAACTGGCCGAAGTGGAGCGCCTGGACCTGGTGCGCCAGGTCCGCGAACTGATCGGCGAGTTGCTGGTG
GACGGAGGCGCCACCCTGGAGCAGGTCGCCGCGCGCCTCGGCATGCCGGCCCGACGTCTGCGCGAACGCCTG
GCGATGGCCGGGGTGCGCTTCAACGACCTGGTCACCGACTACCGCTGCCGACTGGCCAAGGAACTGCTGCTG
AAGACCGACGAGCGCATCGAAGTGATCGTCGAACGCACCGGGTTTTCCGAGCCGAGCACCTTCTATCGCGCG
TTCAAGCGCTGGGTCGGTGAGACGCCGGTGGAGTTCCGCCGGCGCGGGCAGCAGGGGCGCGGGTAG
Translation:
MRDLTDDVALMRPVIDALRASGCDPDRVLVRVGLPPGGLPAGRFPHSAQNLFWKAAADECGEEHVGLHLAEH
LPAFHGLLLEYLFLSSDTFGAGLRHSLRYVRLLSDTLQAQLEVEGERAVLSLGESPAINRHFPEMLAGAVIR
LFGALTEGEFKPLEVQLMNETGAPMERYRAVYGCPTILGMPRYALVFDAAVLDKPSRHAAPELLRMHESLAR
RQLAEVERLDLVRQVRELIGELLVDGGATLEQVAARLGMPARRLRERLAMAGVRFNDLVTDYRCRLAKELLL
KTDERIEVIVERTGFSEPSTFYRAFKRWVGETPVEFRRRGQQGRG*
AnnotationID:2092GeneID:2084
AnnotatorUID: diggins
Modification Date/Time: 2005-03-10 08:08:45
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA4787
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  97.6% aligned
Score = 76.0 bits (187), Expect = 6e-15
Identities = 32/82 (39%), Positives = 40/82 (48%), Gaps = 1/82 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4171




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21317




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37678




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2084_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2084
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3585
                           PA4787_tr
                           translation of PA4787
                           333
                           99.99
                           99.99
                           0
                           1705.0
     

     
     
110149
                           gb|AAG08173.1|AE004892_4
                           (AE004892) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           333
                           99.99
                           99.99
                           0
                           1705.0
     

     






      

          
GC ORFID: 45086How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4787Glimmer Score: 

          
Start: 4912005Stop: 4911004

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA4787 translation of PA4787Homolog Bit Score 661.0

          
Other Homologs:  t_PA4787 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGTGATCTGACCGACGATGTAGCGCTGATGCGCCCGGTGATCGACGCCCTGCGCGCCAGcGGCTGCGAT 
CCGGACCGGGTCCTGGTCCGTGTCGGGCTGCCGCCGGGTGGCCTGCCGGCCGGCCGTTTCCCCCATTCCGCA 
CAGAACCTGTTCTGGAAGGCCGCCGCCGACGAGTGCGGCGAAGAGCATGTCGGCCTGCACCTGGCCGAGCAC 
CTGCCGGCGTTCCACGGCCTGCTCCTGGAATACCTGTTCCTTTCCAGCGATACCTTCGGCGCCGGCCTGCGC 
CATTCCCTGCGCTACGTACGCCTGCTGTCCGACACCCTGCAGGCGCAACTGGAGGTGGAGGGCGAGCGCGCG 
GTGCTGTCGCTGGGCGAATCGCCGGCGATCAACCGTCACTTCCCGGAAATGCTCGCCGGCGCGGTGATCCGC 
CTGTTCGGCGCGCTCACCGAGGGCGAGTTCAAGCCGCTGGAAGTGCAACTGATGAACGAAACCGGCGCGCCG 
ATGGAGCGCTACCGTGCGGTCTACGGCTGCCCGACGATCCTCGGCATGCCGCGCTACGCGCTGGTATTCGAT 
GCCGCGGTGCTGGACAAACCCTCGCGCCACGCCGCCCCGGAACTGCTGCGCATGCATGAGTCGCTGGCGCGC 
CGGCAACTGGCCGAAGTGGAGCGCCTGGACCTGGTGCGCCAGGTCCGCGAACTGATCGGCGAGTTGCTGGTG 
GACGGAGGCGCCACCCTGGAGCAGGTCGCCGCGCGCCTCGGCATGCCGGCCCGACGTCTGCGCGAACGCCTG 
GCGATGGCCGGGGTGCGCTTCAACGACCTGGTCACCGACTACCGCTGCCGACTGGCCAAGGAACTGCTGCTG 
AAGACCGACGAGCGCATCGAAGTGATCGTCGAACGCACCGGGTTTTCCGAGCCGAGCACCTTCTATCGCGCG 
TTCAAGCGCTGGGTCGGTGAGACGCCGGTGGAGTTCCGCCGGCGCGGGCAGCAGGGGCGCGGGTAG