ViewGene
Locus Name:
GeneID:
Location:

GeneID:2083
TrivialName: PA14_54270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54270
PAO1 Ortholog Locus:PA0774
Sequence Length:969
Protein Length:322
Start: 4815069
Stop: 4816037
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04163.1|AE004512_6 (AE004512) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 319/322 (99%), Positives = 322/322 (100%)
Sequence:
ATGATCCAGCACCTCGCCCTCGACGCCCTCCAGCGACACCTCGCCGGCTCGCCGCTGTACGGCTGGGCGACC
AGCCTGCCCGCGCAGATCGCCGCGCGCATCGAGGAAGGCCACGGCGACCTGGCCCGTTGGTGGAGCGCGGTC
CAGCGCCTACCCCAGGTGCCCGCGCCGAAGGTCGAACTGGCCCAGCGCTTCGCCCTGCACAGCGACCACGAT
GCGGCGCTGCAAGCGCAGGTGAAGGAAGCGCTGCAAGGGCTGATTCCCTGGCGCAAGGGGCCGTTCGACTTC
TTCGGCGTACAGGTCGATACCGAATGGCGTTCCGACTGGAAATGGGAGCGTGTCTCGCCACATGTCGAACTG
CGTGGCAAACGCGTCCTCGACGTCGGCTGCGGCAACGGCTACTACCAGTGGCGCATGCTCGGCGCCGGCGCG
GAAAGCGTGGTCGGGGTCGATCCGAACTGGCTGTTCCTCTGCCAGTTCCTCGCCGCCAAGCGCTACCTGCCG
GAGCTGCCGGCCTGGCACCTGCCGCTGGCCCTGGAAGACCTGCCGGAGAAGCTCGAAGGCTTCGACACGGTG
TTCTCCATGGGTGTGCTCTATCACCGTCGCTCGCCCATCGACCACCTGCTGGCGCTCAAGGACTGCCTGAAG
CGCGGCGGCGAACTGGTCCTGGAGACCCTGGTGGTGGAAGGCGACGCCAGCACCGTGCTGGTGCCCGAGGAC
CGCTACGCGCAGATGCGCAACGTCTGGTTCCTGCCCTCGGTGGCGGCCCTGGAACTCTGGCTGCGCCGCGCC
GGGTTCGCCGACGCGCGCTGCGTCGACGTCAGCCTGACCAGCGTCGAGGAACAACGCTCCACCGAATGGATG
CGTTTCCAGTCGCTGCCGGAATTCCTCGATCCGCAGGACCGTTCGCGAACCGTCGAAGGCCTGCCGGCACCG
ATGCGCGCCACGCTGGTGGCGCGCAAGCCCTGA
Translation:
MIQHLALDALQRHLAGSPLYGWATSLPAQIAARIEEGHGDLARWWSAVQRLPQVPAPKVELAQRFALHSDHD
AALQAQVKEALQGLIPWRKGPFDFFGVQVDTEWRSDWKWERVSPHVELRGKRVLDVGCGNGYYQWRMLGAGA
ESVVGVDPNWLFLCQFLAAKRYLPELPAWHLPLALEDLPEKLEGFDTVFSMGVLYHRRSPIDHLLALKDCLK
RGGELVLETLVVEGDASTVLVPEDRYAQMRNVWFLPSVAALELWLRRAGFADARCVDVSLTSVEEQRSTEWM
RFQSLPEFLDPQDRSRTVEGLPAPMRATLVARKP*
AnnotationID:2091GeneID:2083
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0774, yecP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
Similar to several putative methyltransferases.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4169




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21315




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2083
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3584
                           PA0774_tr
                           translation of PA0774
                           322
                           99.06
                           99.99
                           0
                           1706.0
     

     
     
110121
                           gb|AAG04163.1|AE004512_6
                           (AE004512) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           322
                           99.06
                           99.99
                           0
                           1706.0
     

     
     
110122
                           gb|AAO57669.1|
                           (AE016871) methyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           322
                           70.49
                           81.05
                           3
                           1255.0
     

     
     
110123
                           gb|AAN67062.1|AE016335_2
                           (AE016779) methyltransferase, putative [Pseudomonas putida KT2440]
                           322
                           70.49
                           81.67
                           4
                           1255.0
     

     
     
110124
                           gb|AAO68643.1|
                           (AE016837) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           332
                           54.81
                           69.87
                           19
                           895.0
     

     






      

          
GC ORFID: 45085How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0774Glimmer Score: 

          
Start: 138838Stop: 137870

          
Length: 969


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0774 translation of PA0774Homolog Bit Score 661.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6157 (ORF: BLASTX 484.0), t_PA0774 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCCAGCACCTCGCCCTCGACGCCCTCCAGCGACACCTCGCCGGCTCGCCGCTGTACGGCTGGGCGACC 
AGCCTGCCCGCGCAGATCGCCGCGCGCATCGAGGAAGGCCACGGCGACCTGGCCCGTTGGTGGAGCGCGGTC 
CAGCGCCTACCCCAGGTGCCCGCGCCGAAGGTCGAACTGGCCCAGCGCTTCGCCCTGCACAGCGACCACGAT 
GCGGCGCTGCAAGCGCAGGTGAAGGAAGCGCTGCAAGGGCTGATTCCCTGGCGCAAGGGGCCGTTCGACTTC 
TTCGGCGTACAGGTCGATACCGAATGGCGTTCCGACTGGAAATGGGAGCGTGTCTCGCCACATGTCGAACTG 
CGTGGCAAACGCGTCCTCGACGTCGGCTGCGGCAACGGCTACTACCAGTGGCGCATGCTCGGCGCCGGCGCG 
GAAAGCGTGGTCGGGGTCGATCCGAACTGGCTGTTCCTCTGCCAGTTCCTCGCCGCCAAGCGCTACCTGCCG 
GAGCTGCCGGCCTGGCACCTGCCGCTGGCCCTGGAAGACCTGCCGGAGAAGCTCGAAGGCTTCGACACGGTG 
TTCTCCATGGGTGTGCTCTATCACCGTCGCTCGCCCATCGACCACCTGCTGGCGCTCAAGGACTGCCTGAAG 
CGCGGCGGCGAACTGGTCCTGGAGACCCTGGTGGTGGAAGGCGACGCCAGCACCGTGCTGGTGCCCGAGGAC 
CGCTACGCGCAGATGCGCAACGTCTGGTTCCTGCCCTCGGTGGCGGCCCTGGAACTCTGGCTGCGCCGCGCC 
GGGTTCGCCGACGCGCGCTGCGTCGACGTCAGCCTGACCAGCGTCGAGGAACAACGCTCCACCGAATGGATG 
CGTTTCCAGTCGCTGCCGGAATTCCTCGATCCGCAGGACCGTTCGCGAACCGTCGAAGGCCTGCCGGCACCG 
ATGCGCGCCACGCTGGTGGCGCGCAAGCCCTGA