ViewGene

Locus Name:
GeneID:
Location:

GeneID:2082
TrivialName: PA14_68900
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68900
PAO1 Ortholog Locus:PA5217
Sequence Length:999
Protein Length:332
Start: 6147798
Stop: 6146800
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08602.1|AE004934_9 (AE004934) probable binding protein component of ABC iron transporter [Pseudomonas aeruginosa PAO1]
Identities = 332/332 (100%), Positives = 332/332 (100%)
Sequence:
ATGCAGGCAAGCAAAGCTCTACTCGCCGCCCTGGCTCTGGGCATCACCGGCCTGGCCCAGGCCGCCGACGAA
GTGGTGGTGTATTCCTCGCGCATCGACGAGCTGATCAAGCCGGTGTTCGATGCCTACACCAGCAAGACCGGC
GTGAAGGTCAAGTTCATCACCGACAAGGAAGCGCCGCTGATGGCGCGGATCAAGGCCGAAGGCGCGAACACC
CCGGCCGACCTGCTGCTCACCGTGGACGCCGGCAACCTCTGGCAGGCCGAGCAGATGGGCCTGCTGCAACCG
TTCAAGTCGGCCACCATCGAACGGAACATTCCCTCGCAGTATCGTTCCAGCACCGATAGCTGGACCGGACTT
TCGCTGCGCGCGCGGACCATCGTCTACTCCACCGAGCGGGTCAAGCCGGAAGAGCTGAGCACCTACGAAGCC
CTGGCCGACAAGCAATGGGAAGGCCGCCTGTGCCTGCGCACGGCGAAGAAGGTCTACAACCAGTCGCTGACC
GGGACCCTGATCGAGACCCACGGGGCGCAGAAGACCGAGGAAATCCTCCAGGGCTGGGTGAACAACCTGGCC
ACCGACGTATTCGCCGACGACAACGCGGTGATCCAGGCGGTGGACGCCGGCCAGTGCGACGTCGGCATCGTC
AATACCTACTACTACGGACGCCTGCACAAGCAGAACCCGAACCTGCGGGTCAAGCTGTTCTGGCCGAACCAG
GCCGACCGCGGCGTCCACGTCAACCTGTCGGGCATCGGCCTGACTCGCCACGCACCGCATCCCGAGGCAGCC
AAGGCGCTGGTGGAATGGATGACCGGGCCCGATGCCCAGGCGCTGTTCGCCGGGATCAACCAGGAATTCCCG
GCCAACCCGCAGGTCGCGCCGTCAGCCGAAGTCGCCAGCTGGGGCAGCTTCAAGGCCGACAGCATCCCGGTG
GAAGTCGCCGGCAAGCGCCAGGCCGAGGCGATTCGCCTGATGGACCGCGCCGGCTGGAACTGA
Translation:
MQASKALLAALALGITGLAQAADEVVVYSSRIDELIKPVFDAYTSKTGVKVKFITDKEAPLMARIKAEGANT
PADLLLTVDAGNLWQAEQMGLLQPFKSATIERNIPSQYRSSTDSWTGLSLRARTIVYSTERVKPEELSTYEA
LADKQWEGRLCLRTAKKVYNQSLTGTLIETHGAQKTEEILQGWVNNLATDVFADDNAVIQAVDAGQCDVGIV
NTYYYGRLHKQNPNLRVKLFWPNQADRGVHVNLSGIGLTRHAPHPEAAKALVEWMTGPDAQALFAGINQEFP
ANPQVAPSAEVASWGSFKADSIPVEVAGKRQAEAIRLMDRAGWN*
AnnotationID:2090GeneID:2082
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 05:05:37
Gene Name:
Confidence Code:3
GeneProduct:putative iron ABC transporter, periplasmic iron-binding protein
Cell Localization:()
Synonyms:fbpA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1840
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53859.1| (AE016857) iron ABC transporter, periplasmic iron-binding protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 333

 Score =  569 bits (1467), Expect = e-162
 Identities = 279/333 (83%), Positives = 304/333 (91%), Gaps = 1/333 (0%)

>gb|AAN70761.1|AE016720_4 (AE016793) iron ABC transporter, periplasmic iron-binding protein,
           putative [Pseudomonas putida KT2440]
          Length = 333

 Score =  566 bits (1458), Expect = e-161
 Identities = 279/333 (83%), Positives = 305/333 (91%), Gaps = 1/333 (0%)

Structural Features:
COG1840, AfuA, ABC-type Fe3+ transport system, periplasmic component 
[Inorganic ion transport and metabolism] 
CD-Length = 299 residues, 100.0% aligned
Score =  182 bits (463), Expect = 5e-47
Identities = 77/304 (25%), Positives = 134/304 (44%), Gaps = 15/304 (4%)
Genomic Context:
Comment:
ReferenceID:4167
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21313
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34848
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2082_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2082

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3583 PA5217_tr translation of PA5217 332 99.99 99.99 0 1708.0
110111 gb|AAG08602.1|AE004934_9 (AE004934) probable binding protein component of ABC iron transporter [Pseudomonas aeruginosa PAO1] 332 99.99 99.99 0 1708.0
110112 gb|AAO53859.1| (AE016857) iron ABC transporter, periplasmic iron-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 333 83.78 91.29 1 1469.0
110113 gb|AAN70761.1|AE016720_4 (AE016793) iron ABC transporter, periplasmic iron-binding protein, putative [Pseudomonas putida KT2440] 333 83.78 91.59 1 1460.0
110114 gb|AAQ59582.1| (AE016916) ABC transporter, iron binding protein [Chromobacterium violaceum ATCC 12472] 332 53.31 72.89 2 971.0
GC ORFID: 45084How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5217Glimmer Score:
Start: 5411484Stop: 5410486
Length: 999
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5217 translation of PA5217Homolog Bit Score 662.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3165 (ORF: BLASTX 553.0), t_PA5217 (ORF: GLIMMER)
GC ORF Sequence
ATGCAGGCAAGCAAAGCTCTACTCGCCGCCCTGGCTCTGGGCATCACCGGCCTGGCCCAGGCCGCCGACGAA
GTGGTGGTGTATTCCTCGCGCATCGACGAGCTGATCAAGCCGGTGTTCGATGCCTACACCAGCAAGACCGGC
GTGAAGGTCAAGTTCATCACCGACAAGGAAGCGCCGCTGATGGCGCGGATCAAGGCCGAAGGCGCGAACACC
CCGGCCGACCTGCTGCTCACCGTGGACGCCGGCAACCTCTGGCAGGCCGAGCAGATGGGCCTGCTGCAACCG
TTCAAGTCGGCCACCATCGAACGGAACATTCCCTCGCAGTATCGTTCCAGCACCGATAGCTGGACCGGACTT
TCGCTGCGCGCGCGGACCATCGTCTACTCCACCGAGCGGGTCAAGCCGGAAGAGCTGAGCACCTACGAAGCC
CTGGCCGACAAGCAATGGGAAGGCCGCCTGTGCCTGCGCACGGCGAAGAAGGTCTACAACCAGTCGCTGACC
GGGACCCTGATCGAGACCCACGGGGCGCAGAAGACCGAGGAAATCCTCCAGGGCTGGGTGAACAACCTGGCC
ACCGACGTATTCGCCGACGACAACGCGGTGATCCAGGCGGTGGACGCCGGCCAGTGCGACGTCGGCATCGTC
AATACCTACTACTACGGACGCCTGCACAAGCAGAACCCGAACCTGCGGGTCAAGCTGTTCTGGCCGAACCAG
GCCGACCGCGGCGTCCACGTCAACCTGTCGGGCATCGGCCTGACTCGCCACGCACCGCATCCCGAGGCAGCC
AAGGCGCTGGTGGAATGGATGACCGGGCCCGATGCCCAGGCGCTGTTCGCCGGGATCAACCAGGAATTCCCG
GCCAACCCGCAGGTCGCGCCGTCAGCCGAAGTCGCCAGCTGGGGCAGCTTCAAGGCCGACAGCATCCCGGTG
GAAGTCGCCGGCAAGCGCCAGGCCGAGGCGATTCGCCTGATGGACCGCGCCGGCTGGAACTGA