ViewGene

Locus Name:
GeneID:
Location:

GeneID:2079
TrivialName: PA14_12920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12920
PAO1 Ortholog Locus:PA3938
Sequence Length:1014
Protein Length:337
Start: 1107458
Stop: 1108471
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07325.1|AE004811_8 (AE004811) probable periplasmic taurine-binding protein precursor [Pseudomonas aeruginosa PAO1]
Identities = 337/337 (100%), Positives = 337/337 (100%)
Sequence:
ATGAAACGCCCGAATTCCCTGCACCGCCTGGTGGCAGCCCTGGCCTTTGCCAGCCTTTCCGTCGCCGCCCAG
GCCGCCGACATCACGGTCGGCTACCAGACCGGCATCGACCCGACCAAGGTGCCCCAGGCCGATGGCCTGTAC
GAGAAAGCCATCGGCGAGAAGATCGACTGGCGCCGCTTCAACAGCGGTCCGGAAGTGATCGCCGCGCTCGCC
TCCGGAGACCTGCAACTCGGCAACATCGGGTCCAGCCCGCTGGCAGCGGCGACCTCGCGGAAGCTGCCGATC
GTCGCCTTCATCGTTTCCGCGCAGATCAACGCCGCCGAGGCGCTGGTGGTGCGCAATGGAAGCGGGATCGGG
AAACCCGAGGACCTGGTCGGCAAGACCATCGCTACCCCGTTCGTTTCAACCTCCCACTACAGCCTGCTCGGC
GCCCTCAAGCACTGGCAGATCGATCCGTCCAAGGTGAAGATCGTCAACCTCAACCCGGCCGAGATCGCTGCC
GCCTGGCGTCGCGGCGACATCGACGGGGCCTTCGTCTGGTCGCCGGCGCTGGGCGAGATCAAGAAAAGCGGC
AAGGTCCTCACCGACGCCGCCGAAGTCGGCCAGTGGGGTGCGCCGACCTTCGAGGTGTGGGTGGCGCGCAAG
GACTTCGCCGAGAAGCATCCTGAAATCGTCGCCCGCTTCGCCCGCGTCAGCCTCGATTCCTTCGCCGACTAC
AACGCGCACAAGGCCGAATGGACCGCCGACTCCGAGCCGGTGAAGAAGATCGCCCGGCTGACCGGCGCCGAT
CCCAGGGACGTCCCCGAACTGCTGGCCGGCTCGACCTTCCCGGAAAGCCAGGCGCAACTGTCCGCCGACCTG
CTCGGCGGCGGCACCGCCAAGGCTATCGCCGGCACTGCCGAATTCCTCAAGGAACAGAAGCGCGTGCCGGCC
GTCCTCGGCGACTACTCGCCCTACGTCAGCGCCGACTTCGTGCGCCAGGCGGAGCAGGTCCAGGTCGGCCAG
CGCTGA
Translation:
MKRPNSLHRLVAALAFASLSVAAQAADITVGYQTGIDPTKVPQADGLYEKAIGEKIDWRRFNSGPEVIAALA
SGDLQLGNIGSSPLAAATSRKLPIVAFIVSAQINAAEALVVRNGSGIGKPEDLVGKTIATPFVSTSHYSLLG
ALKHWQIDPSKVKIVNLNPAEIAAAWRRGDIDGAFVWSPALGEIKKSGKVLTDAAEVGQWGAPTFEVWVARK
DFAEKHPEIVARFARVSLDSFADYNAHKAEWTADSEPVKKIARLTGADPRDVPELLAGSTFPESQAQLSADL
LGGGTAKAIAGTAEFLKEQKRVPAVLGDYSPYVSADFVRQAEQVQVGQR*
AnnotationID:2087GeneID:2079
AnnotatorUID: danlee
Modification Date/Time: 2006-04-07 13:01:43
Gene Name:
Confidence Code:3
GeneProduct:probable ABC-type taurine transporter, periplasmic component
Cell Localization:()
Synonyms:PA3938
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4521,COG0715,pfam06642
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gb|AAG54715.1|AE005216_3 (AE005216) taurine transport system periplasmic protein [Escherichia coli O157:H7 EDL933]
Length: 337
Identity: 51.03
Similarity: 69.13
Gaps: 17
Score: 887.0
Structural Features:
gnl|CDD|13701 COG4521, TauA, ABC-type taurine transport
system, periplasmic component [Inorganic ion transport and
metabolism]
Length = 334
Score =  494 bits (1273), Expect = e-140
Identities = 218/331 (65%), Positives = 264/331 (79%)
Genomic Context:
Comment:
ReferenceID:4161
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21307
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2079

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3580 PA3938_tr translation of PA3938 337 99.99 99.99 0 1708.0
109948 gb|AAG07325.1|AE004811_8 (AE004811) probable periplasmic taurine-binding protein precursor [Pseudomonas aeruginosa PAO1] 337 99.99 99.99 0 1708.0
109949 gb|AAO58745.1| (AE016875) taurine ABC transporter, periplasmic taurine-binding protein [Pseudomonas syringae pv. tomato str. DC3000] 337 56.08 69.43 12 958.0
109950 gb|AAQ60526.1| (AE016920) taurine transport system substrate-binding protein [Chromobacterium violaceum ATCC 12472] 338 55.62 71.89 10 955.0
109951 gb|AAN65865.1|AE016214_10 (AE016774) taurine ABC transporter, periplasmic taurine-binding protein [Pseudomonas putida KT2440] 337 54.00 68.84 14 928.0
GC ORFID: 45081How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3938Glimmer Score:
Start: 3846480Stop: 3845467
Length: 1014
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3938 translation of PA3938Homolog Bit Score 662.0
Other Homologs: t_PA3938 (ORF: GLIMMER)
GC ORF Sequence
ATGAAACGCCCGAATTCCCTGCACCGCCTGGTGGCAGCCCTGGCCTTTGCCAGCCTTTCCGTCGCCGCCCAG
GCCGCCGACATCACGGTCGGCTACCAGACCGGCATCGACCCGACCAAGGTGCCCCAGGCCGATGGCCTGTAC
GAGAAAGCCATCGGCGAGAAGATCGACTGGCGCCGCTTCAACAGCGGTCCGGAAGTGATCGCCGCGCTCGCC
TCCGGAGACCTGCAACTCGGCAACATCGGGTCCAGCCCGCTGGCAGCGGCGACCTCGCGGAAGCTGCCGATC
GTCGCCTTCATCGTTTCCGCGCAGATCAACGCCGCCGAGGCGCTGGTGGTGCGCAATGGAAGCGGGATCGGG
AAACCCGAGGACCTGGTCGGCAAGACCATCGCTACCCCGTTCGTTTCAACCTCCCACTACAGCCTGCTCGGC
GCCCTCAAGCACTGGCAGATCGATCCGTCCAAGGTGAAGATCGTCAACCTCAACCCGGCCGAGATCGCTGCC
GCCTGGCGTCGCGGCGACATCGACGGGGCCTTCGTCTGGTCGCCGGCGCTGGGCGAGATCAAGAAAAGCGGC
AAGGTCCTCACCGACGCCGCCGAAGTCGGCCAGTGGGGTGCGCCGACCTTCGAGGTGTGGGTGGCGCGCAAG
GACTTCGCCGAGAAGCATCCTGAAATCGTCGCCCGCTTCGCCCGCGTCAGCCTCGATTCCTTCGCCGACTAC
AACGCGCACAAGGCCGAATGGACCGCCGACTCCGAGCCGGTGAAGAAGATCGCCCGGCTGACCGGCGCCGAT
CCCAGGGACGTCCCCGAACTGCTGGCCGGCTCGACCTTCCCGGAAAGCCAGGCGCAACTGTCCGCCGACCTG
CTCGGCGGCGGCACCGCCAAGGCTATCGCCGGCACTGCCGAATTCCTCAAGGAACAGAAGCGCGTGCCGGCC
GTCCTCGGCGACTACTCGCCCTACGTCAGCGCCGACTTCGTGCGCCAGGCGGAGCAGGTCCAGGTCGGCCAG
CGCTGA