ViewGene
Locus Name:
GeneID:
Location:

GeneID:2078
TrivialName: PA14_13290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13290
PAO1 Ortholog Locus:PA3913
Sequence Length:996
Protein Length:331
Start: 1142001
Stop: 1142996
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07300.1|AE004808_10 (AE004808) probable protease [Pseudomonas aeruginosa PAO1]
Identities = 331/331 (100%), Positives = 331/331 (100%)
Sequence:
ATGCAACTGGTCTGTCCGGCGGGCAGCCTGCCCGCCTTGAAGTCGGCCCTGCGACAGGGCGCCGACGCCATC
TACGTCGGTTTCCGCGACGACACCAACGCCCGCCATTTCGCCGGCCTCAACCTTGACGAACGCCAGTTGCAG
GAAGGCCTGCGGCGAGTCCACGAGGCCGGGCGGCAGCTCTACGTAGCGGTCAACACCTATTCCAGCGCGCAG
GGCTGGGAGCGCTGGCAGCGCGCGGTGGACCAGGCCGCCGACCTCGGCGTCGATGCGTTGATCGCCGCCGAC
GTGGCGGTGCTCGGCTATGCCGCGAAGCGTCATCCGCGGCTCAACCTGCATCTGTCGGTGCAGGGCTCGGCA
ACCAATGCCGCGGCCCTGGCCCTCTATCACGAACGCTACGGCATCCGTCGCGCGGTCCTGCCCCGCGTGCTA
TCGCTGGCGCAGGTACGCCAGGTGGCGGCCGGCAGCCCGGTGCCGGTGGAAGTGTTCGCCTTCGGCAGCCTG
TGCATCATGGCCGAGGGCCGCTGCCACCTGTCCTCCTACGTCACCGGCGAGTCGCCGAACCTCTGCGGCGTC
TGTTCGCCGGCCAGGGCGGTGCGCTGGAGCGAGGAACCGGAGGGGTTGACCTCGCGCCTCAACGAAGTGCTC
ATCGACCGCTACGCCGCCGGCGAGGCGGCCGGCTACCCGACCCTCTGCAAGGGCCGTTTCCTGGTCAATGGC
CAGCGCTTCCATGCGCTGGAGGAACCGACCAGCCTGAACACCCTGGACCTGGTCCCGCAGCTGGCGGAAATC
GGCGTGGCGGCGGTGAAGATCGAAGGCCGCCAGCGCAGCCCGGCCTACGTCGAGCAGGTCACCCGGGTCTGG
CGCCAGGCGCTGGACAGCTACGCCAGCGCGCCGGGCGCCTATAGCGTGCAGCCGCAATGGCAGCGCGCGCTG
GCCGGACTTTCCGAAGGGCACCAGACCACCCTGGGCGCCTATCACCGTTCCTGGCAGTGA
Translation:
MQLVCPAGSLPALKSALRQGADAIYVGFRDDTNARHFAGLNLDERQLQEGLRRVHEAGRQLYVAVNTYSSAQ
GWERWQRAVDQAADLGVDALIAADVAVLGYAAKRHPRLNLHLSVQGSATNAAALALYHERYGIRRAVLPRVL
SLAQVRQVAAGSPVPVEVFAFGSLCIMAEGRCHLSSYVTGESPNLCGVCSPARAVRWSEEPEGLTSRLNEVL
IDRYAAGEAAGYPTLCKGRFLVNGQRFHALEEPTSLNTLDLVPQLAEIGVAAVKIEGRQRSPAYVEQVTRVW
RQALDSYASAPGAYSVQPQWQRALAGLSEGHQTTLGAYHRSWQ*
AnnotationID:2086GeneID:2078
AnnotatorUID: urbach
Modification Date/Time: 2004-03-14 20:08:00
Gene Name:
Confidence Code:3
GeneProduct:putative protease
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0826,pfam01136
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
Similar to Collagenase and related proteases






   
Genomic Context:






   
Comment:


















    ReferenceID:4159




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17102




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2078_CDD.html


    		




 
URL:

















    ReferenceID:21305




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2078
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3579
                           PA3913_tr
                           translation of PA3913
                           331
                           99.99
                           99.99
                           0
                           1708.0
     

     
     
109919
                           gb|AAG07300.1|AE004808_10
                           (AE004808) probable protease [Pseudomonas aeruginosa PAO1]
                           331
                           99.99
                           99.99
                           0
                           1708.0
     

     
     
109920
                           gb|AAL22146.1|
                           (AE008850) putative protease [Salmonella typhimurium LT2]
                           331
                           64.04
                           79.75
                           0
                           1162.0
     

     
     
109921
                           gb|AAO70732.1|
                           (AE016844) putative protease [Salmonella enterica subsp. enterica serovar Typhi Ty2]
                           331
                           64.04
                           79.75
                           0
                           1162.0
     

     
     
109922
                           emb|CAD07796.1|
                           (AL627278) putative protease [Salmonella enterica subsp. enterica serovar Typhi]
                           331
                           64.04
                           79.75
                           0
                           1162.0
     

     






      

          
GC ORFID: 45080How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3913Glimmer Score: 

          
Start: 3811937Stop: 3810942

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3913 translation of PA3913Homolog Bit Score 662.0

          
Other Homologs:  t_PA3913 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAACTGGTCTGTCCGGCGGGCAGCCTGCCCGCCTTGAAGTCGGCCCTGCGACAGGGCGCCGACGCCATC 
TACGTCGGTTTCCGCGACGACACCAACGCCCGCCATTTCGCCGGCCTCAACCTTGACGAACGCCAGTTGCAG 
GAAGGCCTGCGGCGAGTCCACGAGGCCGGGCGGCAGCTCTACGTAGCGGTCAACACCTATTCCAGCGCGCAG 
GGCTGGGAGCGCTGGCAGCGCGCGGTGGACCAGGCCGCCGACCTCGGCGTCGATGCGTTGATCGCCGCCGAC 
GTGGCGGTGCTCGGCTATGCCGCGAAGCGTCATCCGCGGCTCAACCTGCATCTGTCGGTGCAGGGCTCGGCA 
ACCAATGCCGCGGCCCTGGCCCTCTATCACGAACGCTACGGCATCCGTCGCGCGGTCCTGCCCCGCGTGCTA 
TCGCTGGCGCAGGTACGCCAGGTGGCGGCCGGCAGCCCGGTGCCGGTGGAAGTGTTCGCCTTCGGCAGCCTG 
TGCATCATGGCCGAGGGCCGCTGCCACCTGTCCTCCTACGTCACCGGCGAGTCGCCGAACCTCTGCGGCGTC 
TGTTCGCCGGCCAGGGCGGTGCGCTGGAGCGAGGAACCGGAGGGGTTGACCTCGCGCCTCAACGAAGTGCTC 
ATCGACCGCTACGCCGCCGGCGAGGCGGCCGGCTACCCGACCCTCTGCAAGGGCCGTTTCCTGGTCAATGGC 
CAGCGCTTCCATGCGCTGGAGGAACCGACCAGCCTGAACACCCTGGACCTGGTCCCGCAGCTGGCGGAAATC 
GGCGTGGCGGCGGTGAAGATCGAAGGCCGCCAGCGCAGCCCGGCCTACGTCGAGCAGGTCACCCGGGTCTGG 
CGCCAGGCGCTGGACAGCTACGCCAGCGCGCCGGGCGCCTATAGCGTGCAGCCGCAATGGCAGCGCGCGCTG 
GCCGGACTTTCCGAAGGGCACCAGACCACCCTGGGCGCCTATCACCGTTCCTGGCAGTGA