ViewGene
Locus Name:
GeneID:
Location:

GeneID:2077
TrivialName: PA14_32190
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_32190
PAO1 Ortholog Locus:PA2511
Sequence Length:1002
Protein Length:333
Start: 2798224
Stop: 2799225
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05899.1|AE004678_5 (AE004678) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 332/333 (99%), Positives = 333/333 (100%)
Sequence:
ATGATGAGGAGCCATCCCGTCGCCGATCGTGGCGATCTCCATGCCGACCACCTGGACCTGGCCGCCGCCCGT
TCCTGGATGTCGAAGGTCTGCGGGCCGCACCGGCTCGAAGCGGCGAGCCCGGGACTGGTGCAGTTCCAGCAC
CACGGCAACGTGCTGAAGTCGATGTGCACCACCCTCGGCTACATCGGCTACGGCACCGACGTCACCATCACC
GTCGAGGATGCCGCGGCGTTCAACGCCTACAGCCTGAGCCTGCCGCTCAGCGGCGAGCAGGAGCTGTGCCGG
GGCGGGCTGCGCCTGCTCTCCGACGTCCGCCGCGGGGTGATCATCGCGCCCAACGAGCGCCAGGAGCTGAGC
ATCGCCGGGGACTGCCGCAAGTTGCAGGTGGTGATCGGCCGCACGGCGATGCGCAAGGTCCTGGAGGAGATG
TTGCAGCGGCCGATCGATACGCCCTTGCGCTTCGATCCGGAGATGGATGCCCTGGACGGCGCCTCCGCGTCC
TGGTGGCGCACCGTGCGGCACATCAGCGAGGAGATGGCGCGCAGCGAACTCTACGCCCAGGCGTTTTTCAGC
AGCGACCTGGAACGCGCGCTGATCAAGGGACTGATCCTGGCCCAGCCGAACAACTACAGCGAGGCCCTGCAG
CAGGGCCTTGGCGGGCGCCCGCCGCACTACCTGCTGCGCGCTCGCGAGTTTCTCCAGGCCAACGCCCGCGAG
ACCCTGAGCCTGGAGGACGTGGAACGCGCCGCCGGGGTCTCGCGGTTCAAGCTGTTCGAGGGCTTCCGTCGC
TACTTCGGGGTGTCGCCGATGAGCTACCTGAAGCACTACCGGCTCGCCGCGGTGCGCGAGGAGATCCTCGCC
AGCGGCGGCGCCCGCAGCATCTCGACGATTGCCCTGGGCTGGGGCTTCAGCCACCTCGGACGCTTCTCCGTG
GACTACCGCAAGCGCTTCGAGGAAACCCCGAGCATGACCCAGCGCCGCGCCGCGCGGCGCTCCTGA
Translation:
MMRSHPVADRGDLHADHLDLAAARSWMSKVCGPHRLEAASPGLVQFQHHGNVLKSMCTTLGYIGYGTDVTIT
VEDAAAFNAYSLSLPLSGEQELCRGGLRLLSDVRRGVIIAPNERQELSIAGDCRKLQVVIGRTAMRKVLEEM
LQRPIDTPLRFDPEMDALDGASASWWRTVRHISEEMARSELYAQAFFSSDLERALIKGLILAQPNNYSEALQ
QGLGGRPPHYLLRAREFLQANARETLSLEDVERAAGVSRFKLFEGFRRYFGVSPMSYLKHYRLAAVREEILA
SGGARSISTIALGWGFSHLGRFSVDYRKRFEETPSMTQRRAARRS*
AnnotationID:2085GeneID:2077
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 17:05:16
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA2511
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2207,smart00342
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAC41529.1| (AB088420) putative regulatory protein [Pseudomonas resinovorans]
          Length = 338

 Score =  400 bits (1028), Expect = e-111
 Identities = 197/324 (60%), Positives = 247/324 (76%), Gaps = 2/324 (0%)








 
Structural Features:
COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]
CD-Length = 127 residues,  93.7% aligned
Score = 72.6 bits (177), Expect = 7e-14
Identities = 41/121 (33%), Positives = 62/121 (51%), Gaps = 2/121 (1%)

smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein
CD-Length = 84 residues,  95.2% aligned
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Score = 70.6 bits (173), Expect = 2e-13











   
Genomic Context:






   
Comment:


















    ReferenceID:4157




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21303




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33060




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2077_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2077
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3578
                           PA2511_tr
                           translation of PA2511
                           333
                           99.69
                           99.99
                           0
                           1707.0
     

     
     
109915
                           gb|AAG05899.1|AE004678_5
                           (AE004678) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           333
                           99.69
                           99.99
                           0
                           1707.0
     

     
     
109916
                           gb|AAK52294.1|
                           (AY026914) unknown [Pseudomonas putida]
                           333
                           99.69
                           99.99
                           0
                           1707.0
     

     
     
109917
                           dbj|BAC41529.1|
                           (AB088420) putative regulatory protein [Pseudomonas resinovorans]
                           338
                           58.87
                           73.96
                           5
                           1029.0
     

     
     
109918
                           dbj|BAB32750.1|
                           (AB047548) putative regulatory protein [Pseudomonas resinovorans]
                           338
                           58.87
                           73.96
                           5
                           1029.0
     

     






      

          
GC ORFID: 45079How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2511Glimmer Score: 

          
Start: 2155700Stop: 2154699

          
Length: 1002


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2511 translation of PA2511Homolog Bit Score 662.0

          
Other Homologs:  t_PA2511 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGAGGAGCCATCCCGTCGCCGATCGTGGCGATCTCCATGCCGACCACCTGGACCTGGCCGCCGCCCGT 
TCCTGGATGTCGAAGGTCTGCGGGCCGCACCGGCTCGAAGCGGCGAGCCCGGGACTGGTGCAGTTCCAGCAC 
CACGGCAACGTGCTGAAGTCGATGTGCACCACCCTCGGCTACATCGGCTACGGCACCGACGTCACCATCACC 
GTCGAGGATGCCGCGGCGTTCAACGCCTACAGCCTGAGCCTGCCGCTCAGCGGCGAGCAGGAGCTGTGCCGG 
GGCGGGCTGCGCCTGCTCTCCGACGTCCGCCGCGGGGTGATCATCGCGCCCAACGAGCGCCAGGAGCTGAGC 
ATCGCCGGGGACTGCCGCAAGTTGCAGGTGGTGATCGGCCGCACGGCGATGCGCAAGGTCCTGGAGGAGATG 
TTGCAGCGGCCGATCGATACGCCCTTGCGCTTCGATCCGGAGATGGATGCCCTGGACGGCGCCTCCGCGTCC 
TGGTGGCGCACCGTGCGGCACATCAGCGAGGAGATGGCGCGCAGCGAACTCTACGCCCAGGCGTTTTTCAGC 
AGCGACCTGGAACGCGCGCTGATCAAGGGACTGATCCTGGCCCAGCCGAACAACTACAGCGAGGCCCTGCAG 
CAGGGCCTTGGCGGGCGCCCGCCGCACTACCTGCTGCGCGCTCGCGAGTTTCTCCAGGCCAACGCCCGCGAG 
ACCCTGAGCCTGGAGGACGTGGAACGCGCCGCCGGGGTCTCGCGGTTCAAGCTGTTCGAGGGCTTCCGTCGC 
TACTTCGGGGTGTCGCCGATGAGCTACCTGAAGCACTACCGGCTCGCCGCGGTGCGCGAGGAGATCCTCGCC 
AGCGGCGGCGCCCGCAGCATCTCGACGATTGCCCTGGGCTGGGGCTTCAGCCACCTCGGACGCTTCTCCGTG 
GACTACCGCAAGCGCTTCGAGGAAACCCCGAGCATGACCCAGCGCCGCGCCGCGCGGCGCTCCTGA