ViewGene

Locus Name:
GeneID:
Location:

GeneID:2076
TrivialName: PA14_61920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61920
PAO1 Ortholog Locus:PA4681
Sequence Length:1020
Protein Length:339
Start: 5522560
Stop: 5521541
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08068.1|AE004881_11 (AE004881) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 337/339 (99%), Positives = 338/339 (99%)
Sequence:
ATGAGTCGCGCCTGCCTGCTCGCGGCCCTGCTGGCCGCCCCCTTCGCCCATGCCGAGATGACAGCGCTCGAT
GACGAGCAACTGTCGGACGTGCAGGGTGCCGGCATCGGCTTCGTCCTCGACAGCGCCATGGTCGACGGCAAC
AAGGCCACCATCGCGATCAATGGCGTGACCAACACCGCCACCGGGCAGAACGTGCCGATCACGGTAAAGGAG
CTGTACGTCGCCGCCACTGGCAGCAACAAGGGCAGCACCCTGGCGCCGGTGACTCTCGGCCGTCTCAATTTC
CCGTTCAAGCTGAATCTGGCCAAGGGTTCGGTGCTGACCACCCAGCTCGACGACGGGCGGGTGGTCAGCACC
TTGCCGGACACCGCGGACGTGATCGAACTGGCCTTCCCCAGCCTGGTGAGCGGCGCCGGCGGCCAGCCGTGC
ATCGCTGGTTACACCGGTGCCGGCAGCAACTGCTCGAGCCGGGCCAGCGAAAAGGTCGACGCCGGCATCCGC
TTCGACTTCGGCGTCACTTCCACGCGCACCGATGTGCTCAACCTGGACTTCTCCGAACTGGCGATGGACGGT
TCCTACCTGCGCTTCTGGGGCGCCAACGCGCGCAGCCAACTGGTTGGCGAGATGCGCCTGAACCTCTACGCC
AAGACTTTCGAGATCATGTCCTGCGGTGCTGGCTCGCCCAGTTGCGTCAGCGCCGCCGAGCAGGCTGCGCGC
ACCGTCTACCTGACCAACGCCTATGCCAGCGTCGCGCTTGGCTACGGGAAGTCGCAGCCGTTGCTGTTCTCG
GTCACCGCCGACGGCAACTTCACTTTCGAACTGCCCAAGCTGACCCTGGCCAACGCCGCCGACTTCTACGCC
AATGCGCCGCGCACCAGCCTGGTGATCGAGAACCTCAACATCGGCGGTACCCGGCCAGGCTACGGGCAGGTA
CCGACCGGCGGCTACAACATGGGCCGCAACGAGATATCCGGGCTCAGCTTCAACTACCTGAAGGTGACGTCG
CACAACCTCTGA
Translation:
MSRACLLAALLAAPFAHAEMTALDDEQLSDVQGAGIGFVLDSAMVDGNKATIAINGVTNTATGQNVPITVKE
LYVAATGSNKGSTLAPVTLGRLNFPFKLNLAKGSVLTTQLDDGRVVSTLPDTADVIELAFPSLVSGAGGQPC
IAGYTGAGSNCSSRASEKVDAGIRFDFGVTSTRTDVLNLDFSELAMDGSYLRFWGANARSQLVGEMRLNLYA
KTFEIMSCGAGSPSCVSAAEQAARTVYLTNAYASVALGYGKSQPLLFSVTADGNFTFELPKLTLANAADFYA
NAPRTSLVIENLNIGGTRPGYGQVPTGGYNMGRNEISGLSFNYLKVTSHNL*
AnnotationID:2084GeneID:2076
AnnotatorUID: diggins
Modification Date/Time: 2005-03-08 08:08:24
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA4681
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:4155
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21301
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2076

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3577 PA4681_tr translation of PA4681 339 99.41 99.70 0 1711.0
109914 gb|AAG08068.1|AE004881_11 (AE004881) hypothetical protein PA4681 [Pseudomonas aeruginosa PAO1] 339 99.41 99.70 0 1711.0
GC ORFID: 45078How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4681Glimmer Score:
Start: 4786240Stop: 4785221
Length: 1020
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4681 translation of PA4681Homolog Bit Score 663.0
Other Homologs: t_PA4681 (ORF: GLIMMER)
GC ORF Sequence
ATGAGTCGCGCCTGCCTGCTCGCGGCCCTGCTGGCCGCCCCCTTCGCCCATGCCGAGATGACAGCGCTCGAT
GACGAGCAACTGTCGGACGTGCAGGGTGCCGGCATCGGCTTCGTCCTCGACAGCGCCATGGTCGACGGCAAC
AAGGCCACCATCGCGATCAATGGCGTGACCAACACCGCCACCGGGCAGAACGTGCCGATCACGGTAAAGGAG
CTGTACGTCGCCGCCACTGGCAGCAACAAGGGCAGCACCCTGGCGCCGGTGACTCTCGGCCGTCTCAATTTC
CCGTTCAAGCTGAATCTGGCCAAGGGTTCGGTGCTGACCACCCAGCTCGACGACGGGCGGGTGGTCAGCACC
TTGCCGGACACCGCGGACGTGATCGAACTGGCCTTCCCCAGCCTGGTGAGCGGCGCCGGCGGCCAGCCGTGC
ATCGCTGGTTACACCGGTGCCGGCAGCAACTGCTCGAGCCGGGCCAGCGAAAAGGTCGACGCCGGCATCCGC
TTCGACTTCGGCGTCACTTCCACGCGCACCGATGTGCTCAACCTGGACTTCTCCGAACTGGCGATGGACGGT
TCCTACCTGCGCTTCTGGGGCGCCAACGCGCGCAGCCAACTGGTTGGCGAGATGCGCCTGAACCTCTACGCC
AAGACTTTCGAGATCATGTCCTGCGGTGCTGGCTCGCCCAGTTGCGTCAGCGCCGCCGAGCAGGCTGCGCGC
ACCGTCTACCTGACCAACGCCTATGCCAGCGTCGCGCTTGGCTACGGGAAGTCGCAGCCGTTGCTGTTCTCG
GTCACCGCCGACGGCAACTTCACTTTCGAACTGCCCAAGCTGACCCTGGCCAACGCCGCCGACTTCTACGCC
AATGCGCCGCGCACCAGCCTGGTGATCGAGAACCTCAACATCGGCGGTACCCGGCCAGGCTACGGGCAGGTA
CCGACCGGCGGCTACAACATGGGCCGCAACGAGATATCCGGGCTCAGCTTCAACTACCTGAAGGTGACGTCG
CACAACCTCTGA