ViewGene
Locus Name:
GeneID:
Location:

GeneID:2075
TrivialName: PA14_18160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_18160
PAO1 Ortholog Locus:PA3567
Sequence Length:1014
Protein Length:337
Start: 1559993
Stop: 1558980
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06955.1|AE004777_8 (AE004777) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 337/337 (100%), Positives = 337/337 (100%)
Sequence:
ATGAAAGCTGTCGGTTACTACCAATCCCTGCCCATCGACCATCCCGACGCCCTGCTCGACCTCGAACTGCCC
GAGCCCACGCCGGGCCCGCGCGACCTGCTGGTGGAGGTCCGCGCCATCTCGGTCAACCCGGTGGATACCAAG
GTCCGCCAGCGCGCCCAGCCGGAAGCCGGCCAGGCCAAGGTGCTGGGCTGGGATGCGGCGGGCGTGGTGCGC
GCGGTCGGCAGCGAGGTCAGCCTGTTCCGTCCTGGCGATCGGGTCTGGTACGCCGGGGACATCACCCGCCCC
GGTAGCAACAGCGAGCTGCATCGGGTCGACGAGCGCATTGCCGGGCACCTGCCGAAAAGCCTCGACTTCGCC
CAGGCCGCGGCCCTGCCGCTGACCACCATCACTGCCTGGGAACTGCTCTTCGAGCGCTTGCAGATCGCCGAA
GGCAAGGCCGACCAGGGCCAGAGCCTGCTGGTGGTCGGTGCCGCCGGCGGGGTCGGTTCGATCCTGGTCCAA
CTGGCCCGGCAACTGACCGGCCTGAACGTGATCGGCACCGCCTCGCGCGCAGAGACCCAGGCCTGGGTCCGC
GACCTCGGCGCGCACCATGTGATCGACCACGGCAAGCCGCTGGCCGAAGAGCTGAAGCGGATCGGTGTCGCC
GAGGTCAGCCACGTCGCCAGCCTGACCCACACCGACCAGCACCTCGAACAGATCGTCGCCGCGCTGCGCCCG
CAAGGCCGCCTGGCGCTGATCGACGACCCGGCGTCGCTGGACATCGGCAAGCTGAAGCAGAAGAGCCTGTCG
CTGCACTGGGAGTTCATGTACACCCGCTCGATGTTCCAGACCGACGACATGATCGAGCAGCACCGGCTGCTG
GAGCGGGTCGCCGGGCTGATCGACGAAGGCGTGTTGAAGACCACCGTCGGCGAGCATTTCGGCCGCATCGAC
GCGGCCAACCTGCGCCGCGCCCACGCGCTGCTGGAGAGCGGCCGGGCCAAGGGCAAGATCGTTCTCGAAGGG
TTCTGA
Translation:
MKAVGYYQSLPIDHPDALLDLELPEPTPGPRDLLVEVRAISVNPVDTKVRQRAQPEAGQAKVLGWDAAGVVR
AVGSEVSLFRPGDRVWYAGDITRPGSNSELHRVDERIAGHLPKSLDFAQAAALPLTTITAWELLFERLQIAE
GKADQGQSLLVVGAAGGVGSILVQLARQLTGLNVIGTASRAETQAWVRDLGAHHVIDHGKPLAEELKRIGVA
EVSHVASLTHTDQHLEQIVAALRPQGRLALIDDPASLDIGKLKQKSLSLHWEFMYTRSMFQTDDMIEQHRLL
ERVAGLIDEGVLKTTVGEHFGRIDAANLRRAHALLESGRAKGKIVLEGF*
AnnotationID:2083GeneID:2075
AnnotatorUID: diggins
Modification Date/Time: 2005-04-20 06:06:34
Gene Name:
Confidence Code:3
GeneProduct:putative zinc-binding dehydrogenase
Cell Localization:()
Synonyms:PA3567
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0604,pfam00107,KOG1198
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54296.1| (AE016858) alcohol dehydrogenase, zinc-containing [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 349

 Score =  521 bits (1342), Expect = e-147
 Identities = 254/337 (75%), Positives = 293/337 (86%)

>gb|AAM43432.1| (AE012548) bifunctional oxidoreductase/alginate lyase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 335

 Score =  449 bits (1155), Expect = e-125
 Identities = 234/338 (69%), Positives = 269/338 (79%), Gaps = 4/338 (1%)

>gb|AAN53484.1|AE015488_6 (AE015488) alcohol dehydrogenase, zinc-containing [Shewanella
           oneidensis MR-1]
          Length = 337

 Score =  401 bits (1030), Expect = e-111
 Identities = 203/338 (60%), Positives = 262/338 (77%), Gaps = 4/338 (1%)








 
Structural Features:
COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases 
[Energy production and conversion]
CD-Length = 326 residues,  99.7% aligned
Score =  234 bits (598), Expect = 1e-62
Identities = 118/338 (34%), Positives = 165/338 (48%), Gaps = 16/338 (4%)

pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase.
CD-Length = 341 residues,  98.2% aligned
Score =  153 bits (387), Expect = 4e-38
Identities = 92/352 (26%), Positives = 137/352 (38%), Gaps = 49/352 (13%)

KOG1198, Zinc-binding oxidoreductase [Energy production and conversion]
CD-Length = 347 residues,  98.6% aligned
Score =  140 bits (354), Expect = 5e-34
Identities = 88/352 (25%), Positives = 138/352 (39%), Gaps = 27/352 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4153




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21299




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31974




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2075_cdd.html


    		




 
URL:

















    ReferenceID:38101




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2075_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2075
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3576
                           PA3567_tr
                           translation of PA3567
                           337
                           99.99
                           99.99
                           0
                           1711.0
     

     
     
109888
                           gb|AAG06955.1|AE004777_8
                           (AE004777) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           337
                           99.99
                           99.99
                           0
                           1711.0
     

     
     
109889
                           gb|AAO54296.1|
                           (AE016858) alcohol dehydrogenase, zinc-containing [Pseudomonas syringae pv. tomato str. DC3000]
                           349
                           72.77
                           83.95
                           12
                           1342.0
     

     
     
109890
                           dbj|BAC90201.1|
                           (AP006576) gll2260 [Gloeobacter violaceus PCC 7421]
                           337
                           72.70
                           84.86
                           0
                           1282.0
     

     
     
109891
                           gb|AAQ59306.1|
                           (AE016915) probable oxidoreductase [Chromobacterium violaceum ATCC 12472]
                           337
                           70.32
                           81.60
                           0
                           1238.0
     

     






      

          
GC ORFID: 45077How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3567Glimmer Score: 

          
Start: 3393943Stop: 3394956

          
Length: 1014


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3567 translation of PA3567Homolog Bit Score 663.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3605 (ORF: BLASTX 512.0), t_PA3567 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAGCTGTCGGTTACTACCAATCCCTGCCCATCGACCATCCCGACGCCCTGCTCGACCTCGAACTGCCC 
GAGCCCACGCCGGGCCCGCGCGACCTGCTGGTGGAGGTCCGCGCCATCTCGGTCAACCCGGTGGATACCAAG 
GTCCGCCAGCGCGCCCAGCCGGAAGCCGGCCAGGCCAAGGTGCTGGGCTGGGATGCGGCGGGCGTGGTGCGC 
GCGGTCGGCAGCGAGGTCAGCCTGTTCCGTCCTGGCGATCGGGTCTGGTACGCCGGGGACATCACCCGCCCC 
GGTAGCAACAGCGAGCTGCATCGGGTCGACGAGCGCATTGCCGGGCACCTGCCGAAAAGCCTCGACTTCGCC 
CAGGCCGCGGCCCTGCCGCTGACCACCATCACTGCCTGGGAACTGCTCTTCGAGCGCTTGCAGATCGCCGAA 
GGCAAGGCCGACCAGGGCCAGAGCCTGCTGGTGGTCGGTGCCGCCGGCGGGGTCGGTTCGATCCTGGTCCAA 
CTGGCCCGGCAACTGACCGGCCTGAACGTGATCGGCACCGCCTCGCGCGCAGAGACCCAGGCCTGGGTCCGC 
GACCTCGGCGCGCACCATGTGATCGACCACGGCAAGCCGCTGGCCGAAGAGCTGAAGCGGATCGGTGTCGCC 
GAGGTCAGCCACGTCGCCAGCCTGACCCACACCGACCAGCACCTCGAACAGATCGTCGCCGCGCTGCGCCCG 
CAAGGCCGCCTGGCGCTGATCGACGACCCGGCGTCGCTGGACATCGGCAAGCTGAAGCAGAAGAGCCTGTCG 
CTGCACTGGGAGTTCATGTACACCCGCTCGATGTTCCAGACCGACGACATGATCGAGCAGCACCGGCTGCTG 
GAGCGGGTCGCCGGGCTGATCGACGAAGGCGTGTTGAAGACCACCGTCGGCGAGCATTTCGGCCGCATCGAC 
GCGGCCAACCTGCGCCGCGCCCACGCGCTGCTGGAGAGCGGCCGGGCCAAGGGCAAGATCGTTCTCGAAGGG 
TTCTGA