ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2073

TrivialName: PA14_71240

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_71240

PAO1 Ortholog Locus: PA5396

Sequence Length: 978

Protein Length: 325

Start: 6347147

Stop: 6348124

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08781.1|AE004952_3 (AE004952) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 324/325 (99%), Positives = 324/325 (99%)

Sequence:

ATGAGCCCAGCCGAATTGCACGCCGACAGCATCGTCATCGACGGTCTGATCATCGCCAAGTGGAACCGCGAA
CTGTTCGAGGACATGCGCAAGGGCGGCCTGACCGCCGCCAATTGCACCGTATCGGTATGGGAAGGCTTCCAG
GCGACGGTGAACAATATCGTCGCCAGCAACAAGCTGATCCGCGACAACAGCGACCTGGTGATCCCGGTGCGC
AGCACCGCGGACATCCGCAAGGCCAAGGAGCAGGGCAAGACCGGCATCCTCTACGGTTTCCAGAATGCCCAC
GCATTCGAGGACCAGATCGGCTACGTCGAGGTGTTCAAGCAGCTCGGCGTGGGCATCGTGCAGATGTGCTAC
AACACCCAGAACCTGGTCGGCACCGGCTGCTACGAGCGTGACGGCGGGCTCTCCGGCTTCGGTCGGGAGATC
GTCGCGGAGATGAACCGGGTCGGCATCATGTGCGACCTCTCCCACGTCGGCAGCAAGACTTCCGAAGAGGTC
ATCCTCGAATCGAAGAAGCCGGTCTGCTACTCCCACTGCCTGCCGTCCGGCCTCAAGGAACACCCGCGCAAC
AAGTCCGACGAGGAGCTGAAGTTCATCGCCGATCATGGCGGCTTCGTCGGTGTGACCATGTTCGCGCCGTTC
CTCAAGAAAGGCATCGACTCGACCATCGACGACTACGCCGAGGCCATCGAGTACGTGATGAACATCGTCGGC
GAGGACGCCATCGGCATCGGCACCGATTTCACCCAGGGCCACGGCCACGACTTCTTCGAGTGGCTGACCCAC
GACAAGGGCTACGCCCGGCGCCTGACCAACTTCGGCAAGATCGTCAACCCGCTGGGCATCCGCACCGTCGGC
GAATTCCCCAACCTCACCGAGACCCTGCTCGAGCGCGGCATGCCCGAGCGCGTGGTGCGCAAGGTGATGGGC
GAGAACTGGGTAAGGGTCCTGCGCGACGTCTGGGGCGAGTAA

Translation:

MSPAELHADSIVIDGLIIAKWNRELFEDMRKGGLTAANCTVSVWEGFQATVNNIVASNKLIRDNSDLVIPVR
STADIRKAKEQGKTGILYGFQNAHAFEDQIGYVEVFKQLGVGIVQMCYNTQNLVGTGCYERDGGLSGFGREI
VAEMNRVGIMCDLSHVGSKTSEEVILESKKPVCYSHCLPSGLKEHPRNKSDEELKFIADHGGFVGVTMFAPF
LKKGIDSTIDDYAEAIEYVMNIVGEDAIGIGTDFTQGHGHDFFEWLTHDKGYARRLTNFGKIVNPLGIRTVG
EFPNLTETLLERGMPERVVRKVMGENWVRVLRDVWGE*

AnnotationID:2081 GeneID:2073

AnnotatorUID: diggins

Modification Date/Time: 2005-03-17 09:09:18

Gene Name:

Confidence Code: 3

GeneProduct: putative dipeptidase

Cell Localization: ()

Synonyms: PA5396

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (2) Amino acid biosynthesis and metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG2355

Secondary Functional Category(ies): putative enzyme

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN65939.1|AE016222_1 (AE016775) dipeptidase, putative [Pseudomonas putida KT2440]
          Length = 325

 Score =  625 bits (1613), Expect = e-179
 Identities = 303/325 (93%), Positives = 315/325 (96%)

>gb|AAO53938.1| (AE016857) renal dipeptidase family protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 325

 Score =  618 bits (1594), Expect = e-176
 Identities = 297/325 (91%), Positives = 312/325 (96%)

>emb|CAD17207.1| (AL646076) PUTATIVE DIPEPTIDASE PROTEIN [Ralstonia solanacearum]
          Length = 323

 Score =  476 bits (1226), Expect = e-134
 Identities = 222/319 (69%), Positives = 265/319 (83%)

Structural Features:

COG2355, Zn-dependent dipeptidase, microsomal dipeptidase homolog 
[Amino acid transport and metabolism]
CD-Length = 313 residues, 100.0% aligned
Score =  317 bits (813), Expect = 1e-87
Identities = 135/337 (40%), Positives = 184/337 (54%), Gaps = 36/337 (10%)

Genomic Context:

Comment:

ReferenceID:4149

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21295

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:34701

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2073_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2073

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3573 PA5396_tr translation of PA5396 325 99.69 99.69 0 1713.0

109865 gb|AAG08781.1|AE004952_3 (AE004952) hypothetical protein PA5396 [Pseudomonas aeruginosa PAO1] 325 99.69 99.69 0 1713.0

109866 gb|AAN65939.1|AE016222_1 (AE016775) dipeptidase, putative [Pseudomonas putida KT2440] 325 93.23 96.92 0 1613.0

109867 gb|AAO53938.1| (AE016857) renal dipeptidase family protein [Pseudomonas syringae pv. tomato str. DC3000] 325 91.38 96.00 0 1594.0

109868 emb|CAD17207.1| (AL646076) PUTATIVE DIPEPTIDASE PROTEIN [Ralstonia solanacearum] 325 68.30 81.84 2 1223.0

GC ORFID: `45075`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA5396`	Glimmer Score:
Start: `5610836`	Stop: `5611813`
Length: `978`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TAA`	Truncated Stop:
Homolog: `t_PA5396 translation of PA5396`	Homolog Bit Score `664.0`
Other Homologs: `psyr_15may02_Scaffold6_revised_gene6579 (ORF: BLASTX 613.0), t_PA5396 (ORF: GLIMMER)`
GC ORF Sequence
ATGAGCCCAGCCGAATTGCACGCCGACAGCATCGTCATCGACGGTCTGATCATCGCCAAGTGGAACCGCGAA CTGTTCGAGGACATGCGCAAGGGCGGCCTGACCGCCGCCAATTGCACCGTATCGGTATGGGAAGGCTTCCAG GCGACGGTGAACAATATCGTCGCCAGCAACAAGCTGATCCGCGACAACAGCGACCTGGTGATCCCGGTGCGC AGCACCGCGGACATCCGCAAGGCCAAGGAGCAGGGCAAGACCGGCATCCTCTACGGTTTCCAGAATGCCCAC GCATTCGAGGACCAGATCGGCTACGTCGAGGTGTTCAAGCAGCTCGGCGTGGGCATCGTGCAGATGTGCTAC AACACCCAGAACCTGGTCGGCACCGGCTGCTACGAGCGTGACGGCGGGCTCTCCGGCTTCGGTCGGGAGATC GTCGCGGAGATGAACCGGGTCGGCATCATGTGCGACCTCTCCCACGTCGGCAGCAAGACTTCCGAAGAGGTC ATCCTCGAATCGAAGAAGCCGGTCTGCTACTCCCACTGCCTGCCGTCCGGCCTCAAGGAACACCCGCGCAAC AAGTCCGACGAGGAGCTGAAGTTCATCGCCGATCATGGCGGCTTCGTCGGTGTGACCATGTTCGCGCCGTTC CTCAAGAAAGGCATCGACTCGACCATCGACGACTACGCCGAGGCCATCGAGTACGTGATGAACATCGTCGGC GAGGACGCCATCGGCATCGGCACCGATTTCACCCAGGGCCACGGCCACGACTTCTTCGAGTGGCTGACCCAC GACAAGGGCTACGCCCGGCGCCTGACCAACTTCGGCAAGATCGTCAACCCGCTGGGCATCCGCACCGTCGGC GAATTCCCCAACCTCACCGAGACCCTGCTCGAGCGCGGCATGCCCGAGCGCGTGGTGCGCAAGGTGATGGGC GAGAACTGGGTAAGGGTCCTGCGCGACGTCTGGGGCGAGTAA