ViewGene
Locus Name:
GeneID:
Location:

GeneID:2071
TrivialName: PA14_52700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52700
PAO1 Ortholog Locus:PA0896
Sequence Length:1017
Protein Length:338
Start: 4672262
Stop: 4671246
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04285.1|AE004524_2 (AE004524) arginine/ornithine succinyltransferase AI subunit [Pseudomonas aeruginosa PAO1]
Identities = 338/338 (100%), Positives = 338/338 (100%)
Sequence:
ATGTTGGTGATGCGCCCCGCCCAAGCGGCCGACCTGCCACAGGTGCAGCGTCTGGCGGCGGACAGCCCGGTA
GGCGTCACGTCCTTGCCGGATGACGCCGAACGCCTGCGCGACAAGATCCTCGCTTCCGAGGCCTCGTTCGCC
GCGGAGGTAAGCTACAACGGCGAGGAAAGCTATTTCTTCGTCCTCGAGGACAGCGCCAGCGGCGAGCTGGTC
GGCTGCTCGGCGATCGTCGCCTCGGCCGGGTTCTCGGAACCGTTCTACAGCTTCCGCAACGAAACCTTCGTG
CACGCCTCGCGCTCGCTGTCGATCCACAACAAGATCCATGTCCTCTCGCTGTGCCACGACCTTACCGGCAAC
AGCCTGCTGACCAGTTTCTACGTACAGCGCGACCTGGTGCAGAGCGTCTATGCCGAACTCAACTCGCGCGGT
CGCCTGCTGTTCATGGCCAGCCATCCGGAGCGCTTCGCCGACGCGGTGGTGGTGGAGATCGTCGGCTACAGC
GACGAGCAGGGCGAATCGCCGTTCTGGAACGCGGTCGGGCGCAACTTCTTCGACCTGAACTACATCGAGGCG
GAAAAGCTCTCCGGGCTGAAGAGCCGCACCTTCCTCGCCGAACTGATGCCGCACTATCCGATCTACGTGCCG
CTGTTGCCGGATGCCGCCCAGGAATCCATGGGCCAGGTTCACCCGCGAGCGCAGATCACCTTCGACATCCTG
ATGCGCGAAGGCTTCGAGACCGACAACTACATCGACATCTTCGATGGCGGCCCGACCCTGCACGCGCGCACC
TCGGGGATTCGCTCGATCGCCCAGAGCCGGGTGGTTCCGGTGAAGATCGGCGAGGCGCCGAAGAGCGGGCGT
CCATACCTGGTCACCAACGGCCAGTTGCAGGACTTCCGCGCGGTTGTGCTGGACCTGGACTGGGCGCCCGGC
AAGCCGGTGGCCCTGAGTGTTGAAGCCGCCGAGGCCCTGGGCGTCGGCGAAGGCGCCAGCGTGCGCCTGGTA
GCGGTCTGA
Translation:
MLVMRPAQAADLPQVQRLAADSPVGVTSLPDDAERLRDKILASEASFAAEVSYNGEESYFFVLEDSASGELV
GCSAIVASAGFSEPFYSFRNETFVHASRSLSIHNKIHVLSLCHDLTGNSLLTSFYVQRDLVQSVYAELNSRG
RLLFMASHPERFADAVVVEIVGYSDEQGESPFWNAVGRNFFDLNYIEAEKLSGLKSRTFLAELMPHYPIYVP
LLPDAAQESMGQVHPRAQITFDILMREGFETDNYIDIFDGGPTLHARTSGIRSIAQSRVVPVKIGEAPKSGR
PYLVTNGQLQDFRAVVLDLDWAPGKPVALSVEAAEALGVGEGASVRLVAV*
AnnotationID:2079GeneID:2071
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 11:11:38
Gene Name:aruF
Confidence Code:1
GeneProduct:arginine/ornithine succinyltransferase AI subunit
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04958, COG3138
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam04958, AstA, Arginine N-succinyltransferase beta subunit. Score: 483, 4e-137
COG3138, AstA, Arginine/ornithine N-succinyltransferase beta subunit. Score: 477, 2e-135






   
Genomic Context:
Cluster of arginine/ornithine catabolic genes, adjacent to arginine/ornithine uptake operon






   
Comment:


















    ReferenceID:4145




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:16987




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI Conserved Domain Search.






    
Reference Type:Blast (text/plain)







    
Data:PA0896_CDS.cgi


    		




 
URL:

















    ReferenceID:21291




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32004




  
Author/Investigator(s):
        Itoh Y.





  
Title:
        Cloning and characterization of the aru genes encoding enzymes of the catabolic arginine succinyltransferase pathway in Pseudomonas aeruginosa.




  
PubMed:
        98053840


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(23):7280-90.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2071
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3571
                           PA0896_tr
                           translation of PA0896
                           338
                           99.99
                           99.99
                           0
                           1714.0
     

     
     
109849
                           gb|AAG04285.1|AE004524_2
                           (AE004524) arginine/ornithine succinyltransferase AI subunit [Pseudomonas aeruginosa PAO1]
                           338
                           99.99
                           99.99
                           0
                           1714.0
     

     
     
109850
                           gb|AAC46010.1|
                           (AF011922) arginine/ornithine succinyltransferase AI subunit [Pseudomonas aeruginosa]
                           338
                           99.99
                           99.99
                           0
                           1714.0
     

     
     
109851
                           gb|AAN70055.1|AE016645_1
                           (AE016790) arginine N-succinyltransferase, alpha subunit [Pseudomonas putida KT2440]
                           339
                           85.54
                           92.03
                           1
                           1491.0
     

     
     
109852
                           gb|AAO55352.1|
                           (AE016862) arginine N-succinyltransferase, alpha subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           343
                           81.63
                           90.67
                           5
                           1447.0
     

     






      

          
GC ORFID: 45073How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0896Glimmer Score: 

          
Start: 281645Stop: 282661

          
Length: 1017


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0896 translation of PA0896Homolog Bit Score 664.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7817 (ORF: BLASTX 561.0), t_PA0896 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTGGTGATGCGCCCCGCCCAAGCGGCCGACCTGCCACAGGTGCAGCGTCTGGCGGCGGACAGCCCGGTA 
GGCGTCACGTCCTTGCCGGATGACGCCGAACGCCTGCGCGACAAGATCCTCGCTTCCGAGGCCTCGTTCGCC 
GCGGAGGTAAGCTACAACGGCGAGGAAAGCTATTTCTTCGTCCTCGAGGACAGCGCCAGCGGCGAGCTGGTC 
GGCTGCTCGGCGATCGTCGCCTCGGCCGGGTTCTCGGAACCGTTCTACAGCTTCCGCAACGAAACCTTCGTG 
CACGCCTCGCGCTCGCTGTCGATCCACAACAAGATCCATGTCCTCTCGCTGTGCCACGACCTTACCGGCAAC 
AGCCTGCTGACCAGTTTCTACGTACAGCGCGACCTGGTGCAGAGCGTCTATGCCGAACTCAACTCGCGCGGT 
CGCCTGCTGTTCATGGCCAGCCATCCGGAGCGCTTCGCCGACGCGGTGGTGGTGGAGATCGTCGGCTACAGC 
GACGAGCAGGGCGAATCGCCGTTCTGGAACGCGGTCGGGCGCAACTTCTTCGACCTGAACTACATCGAGGCG 
GAAAAGCTCTCCGGGCTGAAGAGCCGCACCTTCCTCGCCGAACTGATGCCGCACTATCCGATCTACGTGCCG 
CTGTTGCCGGATGCCGCCCAGGAATCCATGGGCCAGGTTCACCCGCGAGCGCAGATCACCTTCGACATCCTG 
ATGCGCGAAGGCTTCGAGACCGACAACTACATCGACATCTTCGATGGCGGCCCGACCCTGCACGCGCGCACC 
TCGGGGATTCGCTCGATCGCCCAGAGCCGGGTGGTTCCGGTGAAGATCGGCGAGGCGCCGAAGAGCGGGCGT 
CCATACCTGGTCACCAACGGCCAGTTGCAGGACTTCCGCGCGGTTGTGCTGGACCTGGACTGGGCGCCCGGC 
AAGCCGGTGGCCCTGAGTGTTGAAGCCGCCGAGGCCCTGGGCGTCGGCGAAGGCGCCAGCGTGCGCCTGGTA 
GCGGTCTGA