ViewGene
Locus Name:
GeneID:
Location:

GeneID:2070
TrivialName: PA14_06330
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06330
PAO1 Ortholog Locus:PA0486
Sequence Length:975
Protein Length:324
Start: 561194
Stop: 560220
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03875.1|AE004486_4 (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 322/324 (99%), Positives = 324/324 (100%)
Sequence:
ATGTCCCATCCCTTCGACCAACTGACCCCCGACcTCGTCcTGGATGCCGTGGAAAGCCTCGGCTATCTCAGC
GACGCACGGGTGCTGGCGCTCAACAGCTACGAAAACCGCGTGTACCAGGTCGGCATCGAGGACGGCGAGCCG
CTGATCGCCAAGTTCTACCGACCGGACCGCTGGAGCGACGCGGCGATCCGCGAGGAGCACGCCTTCTCCGCC
GAGCTGGCGGAATGCGAGGTGCCGGTGGTGGCGCCGCTGTCGCGCGACGGCGAAAGCCTGTTCGCATTCGCC
GGCTTCCGCTTCGCCCTGTTCCCCCGGCGCGGCGGGCGCGCGCCCGAGCCGGGCAATCTCGACCAGCTCTAC
CGCCTCGGCCAGTTGCTCGGCCGCCTGCACGCGGTCGGCGCCACGCGGCCGTTCGAGCACCGCGAGGCGCTC
GCTGTGGATAACTTCGGCCACGCCTCGCTGGCCACCCTGCTGGAAGGCAATTTCATCCCCAGGAGCCTGCTG
CCGGCCTACGAGTCGGTCGCCCGCGACCTGCTGAAACGCCTCGACGCCCTGTTCGCCGAGGTGCCCTACCAG
CCGATCCGCCTGCACGGCGACTGCCATCCGGGCAACCTGCTGTGCCGCGACGAGGTCTACCACATGGTCGAT
CTCGACGACTGCCGCATGGGCCCGGCCCTCCAGGACCTGTGGATGATGCTCGCCGGCGAGCGCCACGAACGC
CTGGCGCAGATTGCCGAACTGGTCGACGGCTACAATGAGTTCCACGACTTCGACCCGCGCCAGCTACCGCTG
CTCGAAGGCCTGCGCAGCCTCCGCCTGATGCACTACAGCGCCTGGCTCGCGCGGCGCTGGGACGACCCGGCG
TTCCCACCGAGCTTCCCCTGGTTCGGCAGTGAACGTTACTGGGGCGAGCAGGTGCTGGTGCTGCGCGAACAA
CTGGCGGCGCTGGACGAGGAACCGCTGCGGCTGTTCTGA
Translation:
MSHPFDQLTPDLVLDAVESLGYLSDARVLALNSYENRVYQVGIEDGEPLIAKFYRPDRWSDAAIREEHAFSA
ELAECEVPVVAPLSRDGESLFAFAGFRFALFPRRGGRAPEPGNLDQLYRLGQLLGRLHAVGATRPFEHREAL
AVDNFGHASLATLLEGNFIPRSLLPAYESVARDLLKRLDALFAEVPYQPIRLHGDCHPGNLLCRDEVYHMVD
LDDCRMGPALQDLWMMLAGERHERLAQIAELVDGYNEFHDFDPRQLPLLEGLRSLRLMHYSAWLARRWDDPA
FPPSFPWFGSERYWGEQVLVLREQLAALDEEPLRLF*
AnnotationID:2078GeneID:2070
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 17:05:19
Gene Name:
Confidence Code:3
GeneProduct:putative putative homoserine kinase type II
Cell Localization:()
Synonyms:PA0486
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2334
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO09525.1|AE016800_130 (AE016800) Putative homoserine kinase type II [Vibrio vulnificus
           CMCP6]
          Length = 328

 Score =  310 bits (795), Expect = 6e-84
 Identities = 159/321 (49%), Positives = 215/321 (66%), Gaps = 6/321 (1%)








 
Structural Features:
COG2334, Putative homoserine kinase type II (protein kinase fold) 
CD-Length = 331 residues,  98.5% aligned
Score =  227 bits (581), Expect = 1e-60
Identities = 121/332 (36%), Positives = 150/332 (45%), Gaps = 16/332 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4143




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21289




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33802




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2070_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2070
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3570
                           PA0486_tr
                           translation of PA0486
                           324
                           99.38
                           99.99
                           0
                           1716.0
     

     
     
109821
                           gb|AAG03875.1|AE004486_4
                           (AE004486) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           324
                           99.38
                           99.99
                           0
                           1716.0
     

     
     
109822
                           gb|AAN65990.1|AE016228_3
                           (AE016775) conserved hypothetical protein [Pseudomonas putida KT2440]
                           335
                           78.50
                           87.16
                           11
                           1445.0
     

     
     
109823
                           gb|AAO54028.1|
                           (AE016857) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           324
                           75.61
                           89.50
                           0
                           1371.0
     

     
     
109824
                           emb|CAA72723.1|
                           (Y11998) hypothetical protein [Pseudomonas fluorescens]
                           324
                           62.34
                           70.98
                           72
                           1129.0
     

     






      

          
GC ORFID: 45072How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0486Glimmer Score: 

          
Start: 6362536Stop: 6361562

          
Length: 975


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0486 translation of PA0486Homolog Bit Score 665.0

          
Other Homologs:  t_PA0486 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCCATCCCTTCGACCAACTGACCCCCGACcTCGTCcTGGATGCCGTGGAAAGCCTCGGCTATCTCAGC 
GACGCACGGGTGCTGGCGCTCAACAGCTACGAAAACCGCGTGTACCAGGTCGGCATCGAGGACGGCGAGCCG 
CTGATCGCCAAGTTCTACCGACCGGACCGCTGGAGCGACGCGGCGATCCGCGAGGAGCACGCCTTCTCCGCC 
GAGCTGGCGGAATGCGAGGTGCCGGTGGTGGCGCCGCTGTCGCGCGACGGCGAAAGCCTGTTCGCATTCGCC 
GGCTTCCGCTTCGCCCTGTTCCCCCGGCGCGGCGGGCGCGCGCCCGAGCCGGGCAATCTCGACCAGCTCTAC 
CGCCTCGGCCAGTTGCTCGGCCGCCTGCACGCGGTCGGCGCCACGCGGCCGTTCGAGCACCGCGAGGCGCTC 
GCTGTGGATAACTTCGGCCACGCCTCGCTGGCCACCCTGCTGGAAGGCAATTTCATCCCCAGGAGCCTGCTG 
CCGGCCTACGAGTCGGTCGCCCGCGACCTGCTGAAACGCCTCGACGCCCTGTTCGCCGAGGTGCCCTACCAG 
CCGATCCGCCTGCACGGCGACTGCCATCCGGGCAACCTGCTGTGCCGCGACGAGGTCTACCACATGGTCGAT 
CTCGACGACTGCCGCATGGGCCCGGCCCTCCAGGACCTGTGGATGATGCTCGCCGGCGAGCGCCACGAACGC 
CTGGCGCAGATTGCCGAACTGGTCGACGGCTACAATGAGTTCCACGACTTCGACCCGCGCCAGCTACCGCTG 
CTCGAAGGCCTGCGCAGCCTCCGCCTGATGCACTACAGCGCCTGGCTCGCGCGGCGCTGGGACGACCCGGCG 
TTCCCACCGAGCTTCCCCTGGTTCGGCAGTGAACGTTACTGGGGCGAGCAGGTGCTGGTGCTGCGCGAACAA 
CTGGCGGCGCTGGACGAGGAACCGCTGCGGCTGTTCTGA