ViewGene

Locus Name:
GeneID:
Location:

GeneID: 207

TrivialName: PA14_21190

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_21190

PAO1 Ortholog Locus: PA3311

Sequence Length: 2358

Protein Length: 785

Start: 1834664

Stop: 1832307

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG06699.1|AE004753_7 (AE004753) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 776/785 (98%), Positives = 779/785 (99%), Gaps = 2/785 (0%)

Sequence:

ATGCCTTTTCTCCCTGGGAAGATGCCGAAACCGGCCGTATGTCGGCGGCCAGCGACTTCCTTCCATGCCGAC
CTTGCAGGTGGCTCCCGCTATCTATACTGGAAGCACAATGCCACCCCCATCCCCAGCCCGCGCCCGCGCCGT
CCGCGGGTTTTCCGTGTCCAGGGAGACACCGCTATGGATTGGCAAGGCCTGCGCTTCCTCGGAGAGTCTCCC
GTCGACGGCTACGTGCTGCAGAACTGCACCTATTCTCCGTCGCTGGTGGCGCTCGCCTTCCTCGTCGCCTGC
CTCGCCGGGTACACGGCGCTGGACATGGTCGAGCGGGTCGGCAACAGCCTGAGCCACCCGCGCCGCTGGCAA
TGGGTCGGGGCGTTCTGCCTGGGCAGCGGCATCTGGGCCACGCATTTCGTCGCCATGCTCGCGTTCCACGCG
CCGATCGCCCTGCGCTACGACCTGCCGATCACCGGCCTGTCGCTGCTGATCGCCGTCGCCGCCTCGTACCTG
GCGATGTACATGACCGCCCGCCCGCGCTTCGGCCTACTGCCCTGCCTGCTCGCCGCCTGCTGCATCGGCCTG
GGCATCGCCGCCATGCACTACACCGGGATGGCGGCGATGCGCTCGGTgGCCACCCAGTACTACCAGCCATCG
CTGTTCGCCCTTTCGGTACTGATCGCCATCGGCGCCGCCTTCACCGCCCTCGCCGCGGTCCCCTACCTGCGC
GGCCGGCGCAGCGCGCGCTACCGCTACATGAAACTGATCGCCAGCCTGCTGCTGGCCGGCGCCATCGCCGCC
ATGCATTTCACCGGGATGGCCGCGCTGGTGCTCAGCGTACCCGCCGGCACGCCGCTGGAACTGCAAGCCAGC
GCCGACTCGCTGCGCCTGGGCTGGCTCACCGGAGTGCTCGCCAGCGCCATCGCCGCCTGCGGCATCTGGGCC
GCATGGTCGGAGAAACAACGGGAGCGCCGGCTCAGCGAAAACAGCCGGGTCAACGCCCTGCTCAACCAGCTC
GACCACGCCCACGCCTCGCTGCGCCAGATGGCTCGCTACGACAGCCTGACCGGCCTGCAGAACCGCACGGCA
TTCAACGAAGTGTTCGTCCAGCACCTGGAGAACTGTCGCCTGAGAGGCAAGGGCCTGGCGGTGATGTTCCTC
GACCTCGATCACTTCAAGCGGATCAACGATTCCCTCGGCCACGACTCCGGCGACGAGCTGCTGAAGATCGTC
TCCGAACGCATCCGCAGCGTGTTGCGCGATAGCGACGTGGTGGCGCGCTTCGCCGGCGACGAGTTCTGCGTG
CTCGCCGACCTCACCCAGGACCACGAGGCGCACATCCTCTCGCAACGCCTGATGCAGAAGATGAAGGAACCC
ATCGCCCTGGACGGGCGCACCCTGGTGATGACCGCCAGCGTCGGCGTCAGCCTCTACCCGAACGACGGCGAG
CAGTGCGAGGAGCTGCTGAAGAACGCCGGCCTGGCCCTGCACCAGTCCAAGGCCTGCGGGCGCAACAACGCG
CAGTTCTTCAGCCGGCAACTGCTGGTGCGGGCGACCCAGGAACTGCAGATGGAGGAGGAACTGCGCCAGGCC
CTGCGCGACGACCAGCTGGAGCTGCACTACCAGCCGATCCTCGCCCTCGCCGACGGCGAGGTACACCAGTTG
GAGGCATTGGTGCGCTGGCGCCATCCGACCCAGGGCCTGCTCGGTCCGGACCGCTTCATCGGCCTGGCCGAA
GCCAACGGCATGATCGACCAGCTCGACGACTGGGTGCTGCGACGCGCCTGCCGCGACCTGCGCAGCCTGCAC
CTGGCCGGCCACGAACGGCTGCGGGTGGCGGTCAACTGCTGCGCCAGCAATCTCGGCCGGGCCAGCCTGGTC
GACGAAGTCCGTCATGCGCTGGACCAGGCCGGGCTGGCGGCGCGCTTCCTCGAACTGGAGGTGACCGAGGAC
GCGCTGATGTACAACATCGACCAGACCATCCCGCTGCTCGAACGCCTCCGCGAGCTGGGCGTCAGCCTGTCG
ATCGACGACTTCGGCACCGGCTATTCGTCGCTCGCCTACCTGCGCCGCCTGCCGCTGGACGCGCTGAAGGTG
GATCGCTCGTTCATCATGGACATCCCCGCCTCGCAGCGGGACATGGAAATCGCCCAGGCGATCATCGCGATG
GCCCAGAAGCTCCATCTGAAAGTCGTCGCCGAGGGCGTGGAGACCCCGCAGCAACTGGCGTTCCTGCGGGAG
AACCATTGCGAGCTGGTGCAGGGCTACCTGTTCAGCCGGCCGCTGCCGCTGGCGGCCCTGGAAGAGTTCCTC
CGCGCCTACCGCTTCGACGCCGCGCCGCCGCTGCGCAGCCTGAACCAGGCCTGA

Translation:

MPFLPGKMPKPAVCRRPATSFHADLAGGSRYLYWKHNATPIPSPRPRRPRVFRVQGDTAMDWQGLRFLGESP
VDGYVLQNCTYSPSLVALAFLVACLAGYTALDMVERVGNSLSHPRRWQWVGAFCLGSGIWATHFVAMLAFHA
PIALRYDLPITGLSLLIAVAASYLAMYMTARPRFGLLPCLLAACCIGLGIAAMHYTGMAAMRSVATQYYQPS
LFALSVLIAIGAAFTALAAVPYLRGRRSARYRYMKLIASLLLAGAIAAMHFTGMAALVLSVPAGTPLELQAS
ADSLRLGWLTGVLASAIAACGIWAAWSEKQRERRLSENSRVNALLNQLDHAHASLRQMARYDSLTGLQNRTA
FNEVFVQHLENCRLRGKGLAVMFLDLDHFKRINDSLGHDSGDELLKIVSERIRSVLRDSDVVARFAGDEFCV
LADLTQDHEAHILSQRLMQKMKEPIALDGRTLVMTASVGVSLYPNDGEQCEELLKNAGLALHQSKACGRNNA
QFFSRQLLVRATQELQMEEELRQALRDDQLELHYQPILALADGEVHQLEALVRWRHPTQGLLGPDRFIGLAE
ANGMIDQLDDWVLRRACRDLRSLHLAGHERLRVAVNCCASNLGRASLVDEVRHALDQAGLAARFLELEVTED
ALMYNIDQTIPLLERLRELGVSLSIDDFGTGYSSLAYLRRLPLDALKVDRSFIMDIPASQRDMEIAQAIIAM
AQKLHLKVVAEGVETPQQLAFLRENHCELVQGYLFSRPLPLAALEEFLRAYRFDAAPPLRSLNQA*

AnnotationID:217 GeneID:207

AnnotatorUID: diggins

Modification Date/Time: 2006-01-15 13:01:29

Gene Name:

Confidence Code: 4

GeneProduct: conserved hypothetical protein

Cell Localization: ()

Synonyms: PA3311

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (14) Hypothetical, unclassified, unknown

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: cd01948, COG5001

Secondary Functional Category(ies): signal transduction mechanisms

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN66769.1|AE016305_4 (AE016778) GGDEF domain protein [Pseudomonas putida KT2440]
          Length = 754

 Score =  709 bits (1831), Expect = 0.0
 Identities = 377/713 (52%), Positives = 489/713 (68%), Gaps = 5/713 (0%)

>gb|AAO57562.1| (AE016870) GGDEF domain/EAL domain protein [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 756

 Score =  698 bits (1802), Expect = 0.0
 Identities = 372/694 (53%), Positives = 481/694 (69%), Gaps = 5/694 (0%)

>emb|CAE33809.1| (BX640447) probable signalling protein [Bordetella bronchiseptica]
          Length = 691

 Score =  486 bits (1251), Expect = e-136
 Identities = 290/691 (41%), Positives = 397/691 (57%), Gaps = 19/691 (2%)

Structural Features:

cd01948, EAL, EAL domain. 
CD-Length = 240 residues, 100.0% aligned
Score =  299 bits (767), Expect = 1e-81

COG5001, COG5001, Predicted signal transduction protein containing a membrane domain, 
an EAL and a GGDEF domain 
[Signal transduction mechanisms].
CD-Length = 663 residues, only  62.4% aligned
Score =  315 bits (807), Expect = 2e-86
Identities = 143/418 (34%), Positives = 231/418 (55%), Gaps = 5/418 (1%)

Genomic Context:

Comment:

ReferenceID:417

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17559

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:38236

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 207_cdd.html

URL:

Homologs By Global Alignment

Gene ID:207

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

349 PA3311_tr translation of PA3311 785 98.85 99.23 2 3974.0

21769 gb|AAG06699.1|AE004753_7 (AE004753) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 785 98.85 99.23 2 3974.0

21770 gb|AAN66769.1|AE016305_4 (AE016778) GGDEF domain protein [Pseudomonas putida KT2440] 825 45.93 59.63 111 1831.0

21771 gb|AAO57562.1| (AE016870) GGDEF domain/EAL domain protein [Pseudomonas syringae pv. tomato str. DC3000] 834 45.32 58.63 127 1804.0

21774 emb|CAE37092.1| (BX640428) probable signalling protein [Bordetella parapertussis] 790 37.21 51.26 104 1253.0

GC ORFID: `43209`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA3311`	Glimmer Score:
Start: `3119267`	Stop: `3121624`
Length: `2358`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA3311 translation of PA3311`	Homolog Bit Score `1534.0`
Other Homologs: `t_PA1727 (ORF: BLASTX 471.0), psyr_15may02_Scaffold2_revised_gene4046 (ORF: BLASTX 350.0), t_PA5295 (ORF: BLASTX 307.0), t_PA3311 (ORF: GLIMMER)`
GC ORF Sequence
ATGCCTTTTCTCCCTGGGAAGATGCCGAAACCGGCCGTATGTCGGCGGCCAGCGACTTCCTTCCATGCCGAC CTTGCAGGTGGCTCCCGCTATCTATACTGGAAGCACAATGCCACCCCCATCCCCAGCCCGCGCCCGCGCCGT CCGCGGGTTTTCCGTGTCCAGGGAGACACCGCTATGGATTGGCAAGGCCTGCGCTTCCTCGGAGAGTCTCCC GTCGACGGCTACGTGCTGCAGAACTGCACCTATTCTCCGTCGCTGGTGGCGCTCGCCTTCCTCGTCGCCTGC CTCGCCGGGTACACGGCGCTGGACATGGTCGAGCGGGTCGGCAACAGCCTGAGCCACCCGCGCCGCTGGCAA TGGGTCGGGGCGTTCTGCCTGGGCAGCGGCATCTGGGCCACGCATTTCGTCGCCATGCTCGCGTTCCACGCG CCGATCGCCCTGCGCTACGACCTGCCGATCACCGGCCTGTCGCTGCTGATCGCCGTCGCCGCCTCGTACCTG GCGATGTACATGACCGCCCGCCCGCGCTTCGGCCTACTGCCCTGCCTGCTCGCCGCCTGCTGCATCGGCCTG GGCATCGCCGCCATGCACTACACCGGGATGGCGGCGATGCGCTCGGTgGCCACCCAGTACTACCAGCCATCG CTGTTCGCCCTTTCGGTACTGATCGCCATCGGCGCCGCCTTCACCGCCCTCGCCGCGGTCCCCTACCTGCGC GGCCGGCGCAGCGCGCGCTACCGCTACATGAAACTGATCGCCAGCCTGCTGCTGGCCGGCGCCATCGCCGCC ATGCATTTCACCGGGATGGCCGCGCTGGTGCTCAGCGTACCCGCCGGCACGCCGCTGGAACTGCAAGCCAGC GCCGACTCGCTGCGCCTGGGCTGGCTCACCGGAGTGCTCGCCAGCGCCATCGCCGCCTGCGGCATCTGGGCC GCATGGTCGGAGAAACAACGGGAGCGCCGGCTCAGCGAAAACAGCCGGGTCAACGCCCTGCTCAACCAGCTC GACCACGCCCACGCCTCGCTGCGCCAGATGGCTCGCTACGACAGCCTGACCGGCCTGCAGAACCGCACGGCA TTCAACGAAGTGTTCGTCCAGCACCTGGAGAACTGTCGCCTGAGAGGCAAGGGCCTGGCGGTGATGTTCCTC GACCTCGATCACTTCAAGCGGATCAACGATTCCCTCGGCCACGACTCCGGCGACGAGCTGCTGAAGATCGTC TCCGAACGCATCCGCAGCGTGTTGCGCGATAGCGACGTGGTGGCGCGCTTCGCCGGCGACGAGTTCTGCGTG CTCGCCGACCTCACCCAGGACCACGAGGCGCACATCCTCTCGCAACGCCTGATGCAGAAGATGAAGGAACCC ATCGCCCTGGACGGGCGCACCCTGGTGATGACCGCCAGCGTCGGCGTCAGCCTCTACCCGAACGACGGCGAG CAGTGCGAGGAGCTGCTGAAGAACGCCGGCCTGGCCCTGCACCAGTCCAAGGCCTGCGGGCGCAACAACGCG CAGTTCTTCAGCCGGCAACTGCTGGTGCGGGCGACCCAGGAACTGCAGATGGAGGAGGAACTGCGCCAGGCC CTGCGCGACGACCAGCTGGAGCTGCACTACCAGCCGATCCTCGCCCTCGCCGACGGCGAGGTACACCAGTTG GAGGCATTGGTGCGCTGGCGCCATCCGACCCAGGGCCTGCTCGGTCCGGACCGCTTCATCGGCCTGGCCGAA GCCAACGGCATGATCGACCAGCTCGACGACTGGGTGCTGCGACGCGCCTGCCGCGACCTGCGCAGCCTGCAC CTGGCCGGCCACGAACGGCTGCGGGTGGCGGTCAACTGCTGCGCCAGCAATCTCGGCCGGGCCAGCCTGGTC GACGAAGTCCGTCATGCGCTGGACCAGGCCGGGCTGGCGGCGCGCTTCCTCGAACTGGAGGTGACCGAGGAC GCGCTGATGTACAACATCGACCAGACCATCCCGCTGCTCGAACGCCTCCGCGAGCTGGGCGTCAGCCTGTCG ATCGACGACTTCGGCACCGGCTATTCGTCGCTCGCCTACCTGCGCCGCCTGCCGCTGGACGCGCTGAAGGTG GATCGCTCGTTCATCATGGACATCCCCGCCTCGCAGCGGGACATGGAAATCGCCCAGGCGATCATCGCGATG GCCCAGAAGCTCCATCTGAAAGTCGTCGCCGAGGGCGTGGAGACCCCGCAGCAACTGGCGTTCCTGCGGGAG AACCATTGCGAGCTGGTGCAGGGCTACCTGTTCAGCCGGCCGCTGCCGCTGGCGGCCCTGGAAGAGTTCCTC CGCGCCTACCGCTTCGACGCCGCGCCGCCGCTGCGCAGCCTGAACCAGGCCTGA