ViewGene
Locus Name:
GeneID:
Location:

GeneID:2069
TrivialName: PA14_67380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67380
PAO1 Ortholog Locus:PA5102
Sequence Length:939
Protein Length:312
Start: 6019090
Stop: 6018152
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08487.1|AE004923_3 (AE004923) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 304/312 (97%), Positives = 309/312 (99%)
Sequence:
ATGGCGCACTACCTGAGCGGGCGTCAGCGCACCCTGGTGCGGCGGCTCCAGGATACCTTCCAGGCGCGCAGC
GAATGGCCGACCTGGCTGCTGATCGCCTGCCTGTACGGCGGTTGGGCACTGCTCGCCAGCCAGTATCGGCAT
TGGGGCTGGCCGGTGCTGGCGGGGCTGGTGCCGTTCGCCTCCCTCTACATGTCGTTGCAGCATGAGCTGATC
CATGGCCACCCGACCCGCTGGCCGAGGTTCAACGCCGTGCTCGGCTACCTGCCGCTGGCCGTCTGGTATCCC
TATCCGCTGTACCGTGACAGCCACTTGCGGCACCACCGCGACGAGCAACTGACCTACCCGGGGCTGGACCCC
GAGAGTCGCTACGTCAGTCTGTCCGAATGGCCGCGCCTGGGCTCCTGGCGGCGGCGCTGGCTCTGCCTGGAC
AAGACCCTGCTCGGTCGCGCCACCCTCGGCCCGCTGCTGGCCCTGGCGGCGATGGCGCGCCTGGAGGGTTCG
CGGTTGCGCCAGGGAGAGGGCGCCGCCTGGCGCCTGTGGGGCCTGCATGCCGTGCTGCTGGGCGGGTTGCTG
GCCGGGCTTTGGCGCTGGGCGGGTATCCCGCCCTGGCTATACCTGCCGGCGGTGGCCTATCCGGCCCTCGGC
CTGAGCATGCTGCGCTCTTTCTACGAGCACCGTCCGGCCCGCGAGCCGGCGCAGCGCAGCGTGCTGGTCGAG
GCGGGGTGGCCGTGGCGGCTGCTGTTCCTCAACAACAACCTGCATCTGGTCCACCACGATCTGCCGGGCCTG
CCCTGGTACCTGCTGCCGCGCGTGTATAACGCAAGCCGCCGTGCCTACCGGCGACGCAGTGGCGATTTCCAC
CTGCCCGGCTATGGTCGTCTATGGCGGCGCCACGGTTGGCGGCCGGTGGATGCGCCGGTGCATCCCGAGCAT
TGA
Translation:
MAHYLSGRQRTLVRRLQDTFQARSEWPTWLLIACLYGGWALLASQYRHWGWPVLAGLVPFASLYMSLQHELI
HGHPTRWPRFNAVLGYLPLAVWYPYPLYRDSHLRHHRDEQLTYPGLDPESRYVSLSEWPRLGSWRRRWLCLD
KTLLGRATLGPLLALAAMARLEGSRLRQGEGAAWRLWGLHAVLLGGLLAGLWRWAGIPPWLYLPAVAYPALG
LSMLRSFYEHRPAREPAQRSVLVEAGWPWRLLFLNNNLHLVHHDLPGLPWYLLPRVYNASRRAYRRRSGDFH
LPGYGRLWRRHGWRPVDAPVHPEH*
AnnotationID:2077GeneID:2069
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:04
Gene Name:
Confidence Code:3
GeneProduct:putative fatty acid desaturase
Cell Localization:()
Synonyms:PA5102
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3239
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3239, DesA, Fatty acid desaturase [Lipid metabolism]
CD-Length = 343 residues,  94.2% aligned
Score =  149 bits (378), Expect = 3e-37
Identities = 82/327 (25%), Positives = 118/327 (36%), Gaps = 19/327 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4141




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21287




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34926




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2069_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2069
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3569
                           PA5102_tr
                           translation of PA5102
                           312
                           97.43
                           99.03
                           0
                           1717.0
     

     
     
109820
                           gb|AAG08487.1|AE004923_3
                           (AE004923) hypothetical protein PA5102 [Pseudomonas aeruginosa PAO1]
                           312
                           97.43
                           99.03
                           0
                           1717.0
     

     






      

          
GC ORFID: 45071How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5102Glimmer Score: 

          
Start: 5282775Stop: 5281837

          
Length: 939


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5102 translation of PA5102Homolog Bit Score 665.0

          
Other Homologs:  t_PA5102 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCGCACTACCTGAGCGGGCGTCAGCGCACCCTGGTGCGGCGGCTCCAGGATACCTTCCAGGCGCGCAGC 
GAATGGCCGACCTGGCTGCTGATCGCCTGCCTGTACGGCGGTTGGGCACTGCTCGCCAGCCAGTATCGGCAT 
TGGGGCTGGCCGGTGCTGGCGGGGCTGGTGCCGTTCGCCTCCCTCTACATGTCGTTGCAGCATGAGCTGATC 
CATGGCCACCCGACCCGCTGGCCGAGGTTCAACGCCGTGCTCGGCTACCTGCCGCTGGCCGTCTGGTATCCC 
TATCCGCTGTACCGTGACAGCCACTTGCGGCACCACCGCGACGAGCAACTGACCTACCCGGGGCTGGACCCC 
GAGAGTCGCTACGTCAGTCTGTCCGAATGGCCGCGCCTGGGCTCCTGGCGGCGGCGCTGGCTCTGCCTGGAC 
AAGACCCTGCTCGGTCGCGCCACCCTCGGCCCGCTGCTGGCCCTGGCGGCGATGGCGCGCCTGGAGGGTTCG 
CGGTTGCGCCAGGGAGAGGGCGCCGCCTGGCGCCTGTGGGGCCTGCATGCCGTGCTGCTGGGCGGGTTGCTG 
GCCGGGCTTTGGCGCTGGGCGGGTATCCCGCCCTGGCTATACCTGCCGGCGGTGGCCTATCCGGCCCTCGGC 
CTGAGCATGCTGCGCTCTTTCTACGAGCACCGTCCGGCCCGCGAGCCGGCGCAGCGCAGCGTGCTGGTCGAG 
GCGGGGTGGCCGTGGCGGCTGCTGTTCCTCAACAACAACCTGCATCTGGTCCACCACGATCTGCCGGGCCTG 
CCCTGGTACCTGCTGCCGCGCGTGTATAACGCAAGCCGCCGTGCCTACCGGCGACGCAGTGGCGATTTCCAC 
CTGCCCGGCTATGGTCGTCTATGGCGGCGCCACGGTTGGCGGCCGGTGGATGCGCCGGTGCATCCCGAGCAT 
TGA