ViewGene

Locus Name:
GeneID:
Location:

GeneID:2067
TrivialName: PA14_09600
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09600
PAO1 Ortholog Locus:PA4201
Sequence Length:1041
Protein Length:346
Start: 824984
Stop: 826024
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
Identities = 345/346 (99%), Positives = 345/346 (99%)
Sequence:
ATGGGACAGGACAAGTTGAAGGTCGCCGTTCTCTTCGGCGGCAGCAGTGAGGAACGGGACGTCTCCATCGCC
AGCGGCGCGCAGGTGATCCAGGCGTTGCGCAGCGCCGGCCACCAGGTGCTGGCGGTGGATACCGCCAGCGGC
CTGCTCGGCGCGGAGGAAGAGCGCCGCCTGCTGGCGAGCAAGGTCAAGGAGGTCCCGCCGGACTCCGACTCG
CTGGCGATCATCCGCAGCGGCAAGCAGAGCCTGCTGAGCGCCGGCGAACTGGCTGGGGTCGACGTGTTCTTC
CTCGCCCTGCACGGCGGCACCGGCGAGGACGGCACCCTGCAGGCGCTGCTGGATGCCGGCGGTTTCGCCTAT
ACCGGCAGCGGCCACCTGGCCAGCGCCATGGCGATGGACAAGGACGTGGCCAAGCGCCTGTTCCTCGCCGCC
GGGGTGGAGACCGCCAGTTGGCTGATGGCGCCGGCCTCGGAAGAGGCGGTGCGCGAGCAACTGGGCTTCCCC
CTGGTGGTCAAGCCGAACAGCCAGGGCTCCACCGTGGGGCTGTCCATCGTGCATTCCCAgGCCGAATTGCAG
CCGGCTATCGAGCTGGCCGGGCGCTATGGCGACGAGGTGATGCTGGAGCGCTTCGTCGCCGGCCGCGAGGTC
ACCGTCGGGGTGCTCGACGACCAGGCGCTGCCGGTGGGCGAGATTCTCCTCGGCGGCCAGGAGGTCTTCGAC
TACGAGCACAAGTACCAGGCCGGCGCGGTGCGCGAGGTGTTTCCCGCCGACCTGCCGCCGGCGATCGCCGCC
GAGGCCCAGCGTCTGGCGCTGAAGGTACACCGGGCGCTGAAGCTGAGCGGCTACAGCCGCACCGACTTCCGC
CTCGACGAACAGGGCCGGCTCTGGTGCCTGGAGGTCAATACCCTGCCGGGCATGACCGCCACCAGCCTGCTG
CCGCAGGCCGCGGCGGCGGCCGGGATCGGTTTCGCCGAACTCTGCGAGCGGATCTGCCGGCTCGGCATCGAG
CGCTGCAAGGGCGCGCGCAAGGCGCGTTCCTGA
Translation:
MGQDKLKVAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVPPDSDS
LAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLASAMAMDKDVAKRLFLAA
GVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHSQAELQPAIELAGRYGDEVMLERFVAGREV
TVGVLDDQALPVGEILLGGQEVFDYEHKYQAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFR
LDEQGRLWCLEVNTLPGMTATSLLPQAAAAAGIGFAELCERICRLGIERCKGARKARS*
AnnotationID:2075GeneID:2067
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 17:05:36
Gene Name:ddlA
Confidence Code:2
GeneProduct:D-alanine-D-alanine ligase A
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(7) Cell wall / LPS / capsule
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01820, COG1181
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:4137
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17026
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search (BLASTP).
Reference Type:Blast (text/plain)
Data:PA4201_CDS.cgi
URL:
ReferenceID:21283
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:2067

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3566 PA4201_tr translation of PA4201 346 99.71 99.71 0 1716.0
109803 gb|AAG07588.1|AE004836_7 (AE004836) D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1] 346 99.71 99.71 0 1716.0
109804 gb|AAR36458.1| (AE017218) D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA] 356 42.13 57.30 50 635.0
109808 emb|CAE43292.1| (BX640420) D-alanine--D-alanine ligase B [Bordetella pertussis] [Bordetella pertussis Tohama I] 355 40.84 56.05 48 595.0
109806 emb|CAE34560.1| (BX640449) D-alanine--D-alanine ligase B [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50] 355 40.84 56.05 48 595.0
GC ORFID: 45069How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4201Glimmer Score:
Start: 4128953Stop: 4127913
Length: 1041
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4201 translation of PA4201Homolog Bit Score 665.0
Other Homologs: t_PA4410 (ORF: BLASTX 207.0), t_PA4201 (ORF: GLIMMER)
GC ORF Sequence
ATGGGACAGGACAAGTTGAAGGTCGCCGTTCTCTTCGGCGGCAGCAGTGAGGAACGGGACGTCTCCATCGCC
AGCGGCGCGCAGGTGATCCAGGCGTTGCGCAGCGCCGGCCACCAGGTGCTGGCGGTGGATACCGCCAGCGGC
CTGCTCGGCGCGGAGGAAGAGCGCCGCCTGCTGGCGAGCAAGGTCAAGGAGGTCCCGCCGGACTCCGACTCG
CTGGCGATCATCCGCAGCGGCAAGCAGAGCCTGCTGAGCGCCGGCGAACTGGCTGGGGTCGACGTGTTCTTC
CTCGCCCTGCACGGCGGCACCGGCGAGGACGGCACCCTGCAGGCGCTGCTGGATGCCGGCGGTTTCGCCTAT
ACCGGCAGCGGCCACCTGGCCAGCGCCATGGCGATGGACAAGGACGTGGCCAAGCGCCTGTTCCTCGCCGCC
GGGGTGGAGACCGCCAGTTGGCTGATGGCGCCGGCCTCGGAAGAGGCGGTGCGCGAGCAACTGGGCTTCCCC
CTGGTGGTCAAGCCGAACAGCCAGGGCTCCACCGTGGGGCTGTCCATCGTGCATTCCCAgGCCGAATTGCAG
CCGGCTATCGAGCTGGCCGGGCGCTATGGCGACGAGGTGATGCTGGAGCGCTTCGTCGCCGGCCGCGAGGTC
ACCGTCGGGGTGCTCGACGACCAGGCGCTGCCGGTGGGCGAGATTCTCCTCGGCGGCCAGGAGGTCTTCGAC
TACGAGCACAAGTACCAGGCCGGCGCGGTGCGCGAGGTGTTTCCCGCCGACCTGCCGCCGGCGATCGCCGCC
GAGGCCCAGCGTCTGGCGCTGAAGGTACACCGGGCGCTGAAGCTGAGCGGCTACAGCCGCACCGACTTCCGC
CTCGACGAACAGGGCCGGCTCTGGTGCCTGGAGGTCAATACCCTGCCGGGCATGACCGCCACCAGCCTGCTG
CCGCAGGCCGCGGCGGCGGCCGGGATCGGTTTCGCCGAACTCTGCGAGCGGATCTGCCGGCTCGGCATCGAG
CGCTGCAAGGGCGCGCGCAAGGCGCGTTCCTGA