ViewGene
Locus Name:
GeneID:
Location:

GeneID:2066
TrivialName: PA14_33780
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33780
PAO1 Ortholog Locus:PA2388
Sequence Length:996
Protein Length:331
Start: 3002758
Stop: 3001763
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05776.1|AE004665_3 (AE004665) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
Identities = 329/331 (99%), Positives = 330/331 (99%)
Sequence:
ATGAAGACACCCTCTCCCGCCGACAGCGACACCCTTGTGCAGGACGCCGCGCATTGGTGCATGCGCCTGCAC
GCCGAGGACTTCTCCGAGGAAGAGCGTGGCGAGTTCCAGCGCTGGCTGGCAGCCGATCCCCGGCACGCCGCC
GAATACGCAGAAATGGAGGAGATCTGGGCGCTCAGCGAACTGCTGCCGCGAACGCCGGCGCCCGAGCTTCGC
AACCACGCCGCAACCCGCCCGTTCGGCCGTCGCCGCAGGGGCTGGAAGAGCCAGGCACGCGCCGCCGCCCTC
GCCCTGCTTATGTTGCCGACGGCCGGCTACCTCGGCTGGCTGCAAGGcTGGATTCCTTCCAGCTACCAGCGC
TAcgaggccGAGGGCAACGTCAGGCATGCCGTTCTTCCCGACGGCAGCGAGGTCGAACTGGACCTCAATACA
CAGCTGAGCTTCGCCAATTTCAAGGACATCCGCCGGGTTTCCCTGGACAGGGGTGAGGCCTACTTCCATGTC
ACCCACGACAGCGCGCACCCCTTCGTGGTCAAGGCCGGCAACGGCTCGATCACCGTCACCGGCACCCGCTTC
AACGTCTGGAAGTACCAGGACAACGTGGTAGTCACCGTCACCGAGGGCTCGGTGAAGGTCCGCAGCGAAGGC
TCGGGCAACGACAGCAGCCTGACTCCCGGCATGCAGGCCAGCTACTATCCGGGCCTGCTGCAACCGTTGGTC
GAGGCCGTGGATACCCGCCAGACGCTGGCCTGGCGCGAGGGCCGCCTGGTACTCGACGACCTGCCCCTGTCC
AAGGCCCTGCCGCTGATCAACCGCTACCTCGACGCTCCGCTGGTCCTGGGCGACAGGAGCGCTGCGAAACTG
CGCATTGGCGGGATCTACAGCACCCGCGACATCCGCAGCCTGGTCGACGCCCTGCCGAAAGTCCTGCCCGTG
GACCTGGAACATCGCGAGGACGGCAGCATCCGCATCAGCAGCCGTTACGCCCAGCTCTGA
Translation:
MKTPSPADSDTLVQDAAHWCMRLHAEDFSEEERGEFQRWLAADPRHAAEYAEMEEIWALSELLPRTPAPELR
NHAATRPFGRRRRGWKSQARAAALALLMLPTAGYLGWLQGWIPSSYQRYEAEGNVRHAVLPDGSEVELDLNT
QLSFANFKDIRRVSLDRGEAYFHVTHDSAHPFVVKAGNGSITVTGTRFNVWKYQDNVVVTVTEGSVKVRSEG
SGNDSSLTPGMQASYYPGLLQPLVEAVDTRQTLAWREGRLVLDDLPLSKALPLINRYLDAPLVLGDRSAAKL
RIGGIYSTRDIRSLVDALPKVLPVDLEHREDGSIRISSRYAQL*
AnnotationID:2074GeneID:2066
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 08:08:19
Gene Name:
Confidence Code:3
GeneProduct:putative transmembrane sensor
Cell Localization:()
Synonyms:PA2388
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam04773,COG3712
Secondary Functional Category(ies):membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69156.1|AE016549_5 (AE016787) transmembrane sensor, putative [Pseudomonas putida
           KT2440]
          Length = 335

 Score =  346 bits (888), Expect = 1e-94
 Identities = 178/323 (55%), Positives = 227/323 (70%), Gaps = 13/323 (4%)








 
Structural Features:
pfam04773, FecR, FecR protein. FecR is involved in regulation of iron dicitrate transport.
FecR is probably a sensor that recognises iron dicitrate in the periplasm.
CD-Length = 323 residues, 100.0% aligned
Score =  282 bits (722), Expect = 5e-77
Identities = 126/328 (38%), Positives = 168/328 (51%), Gaps = 11/328 (3%)

COG3712, FecR, Fe2+-dicitrate sensor, membrane component 
[Inorganic ion transport and metabolism / Signal transduction mechanisms]
CD-Length = 322 residues, 100.0% aligned
Score =  276 bits (708), Expect = 2e-75
Identities = 133/330 (40%), Positives = 165/330 (50%), Gaps = 11/330 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4135




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21281




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32937




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2066_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2066
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3565
                           PA2388_tr
                           translation of PA2388
                           331
                           99.39
                           99.69
                           0
                           1715.0
     

     
     
109797
                           gb|AAG05776.1|AE004665_3
                           (AE004665) probable transmembrane sensor [Pseudomonas aeruginosa PAO1]
                           331
                           99.39
                           99.69
                           0
                           1715.0
     

     
     
109798
                           gb|AAN69156.1|AE016549_5
                           (AE016787) transmembrane sensor, putative [Pseudomonas putida KT2440]
                           344
                           52.90
                           67.44
                           22
                           889.0
     

     
     
109799
                           gb|AAO55869.1|
                           (AE016864) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           342
                           48.83
                           65.20
                           11
                           831.0
     

     
     
109800
                           emb|CAE38970.1|
                           (BX640434) putative inner membrane sensor for iron transport [Bordetella parapertussis]
                           337
                           43.02
                           57.27
                           20
                           678.0
     

     






      

          
GC ORFID: 45068How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2388Glimmer Score: 

          
Start: 1951158Stop: 1952153

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2388 translation of PA2388Homolog Bit Score 665.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene331 (ORF: BLASTX 329.0), t_PA2388 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAGACACCCTCTCCCGCCGACAGCGACACCCTTGTGCAGGACGCCGCGCATTGGTGCATGCGCCTGCAC 
GCCGAGGACTTCTCCGAGGAAGAGCGTGGCGAGTTCCAGCGCTGGCTGGCAGCCGATCCCCGGCACGCCGCC 
GAATACGCAGAAATGGAGGAGATCTGGGCGCTCAGCGAACTGCTGCCGCGAACGCCGGCGCCCGAGCTTCGC 
AACCACGCCGCAACCCGCCCGTTCGGCCGTCGCCGCAGGGGCTGGAAGAGCCAGGCACGCGCCGCCGCCCTC 
GCCCTGCTTATGTTGCCGACGGCCGGCTACCTCGGCTGGCTGCAAGGcTGGATTCCTTCCAGCTACCAGCGC 
TAcgaggccGAGGGCAACGTCAGGCATGCCGTTCTTCCCGACGGCAGCGAGGTCGAACTGGACCTCAATACA 
CAGCTGAGCTTCGCCAATTTCAAGGACATCCGCCGGGTTTCCCTGGACAGGGGTGAGGCCTACTTCCATGTC 
ACCCACGACAGCGCGCACCCCTTCGTGGTCAAGGCCGGCAACGGCTCGATCACCGTCACCGGCACCCGCTTC 
AACGTCTGGAAGTACCAGGACAACGTGGTAGTCACCGTCACCGAGGGCTCGGTGAAGGTCCGCAGCGAAGGC 
TCGGGCAACGACAGCAGCCTGACTCCCGGCATGCAGGCCAGCTACTATCCGGGCCTGCTGCAACCGTTGGTC 
GAGGCCGTGGATACCCGCCAGACGCTGGCCTGGCGCGAGGGCCGCCTGGTACTCGACGACCTGCCCCTGTCC 
AAGGCCCTGCCGCTGATCAACCGCTACCTCGACGCTCCGCTGGTCCTGGGCGACAGGAGCGCTGCGAAACTG 
CGCATTGGCGGGATCTACAGCACCCGCGACATCCGCAGCCTGGTCGACGCCCTGCCGAAAGTCCTGCCCGTG 
GACCTGGAACATCGCGAGGACGGCAGCATCCGCATCAGCAGCCGTTACGCCCAGCTCTGA