ViewGene

Locus Name:
GeneID:
Location:

GeneID:2065
TrivialName: PA14_36110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36110
PAO1 Ortholog Locus:PA2211
Sequence Length:960
Protein Length:319
Start: 3218755
Stop: 3217796
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05599.1|AE004647_8 (AE004647) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 318/319 (99%), Positives = 318/319 (99%)
Sequence:
ATGGCTGAGCTGTACGACGGGCCGATCGTCGACGCCCATCATCATTTCTGGGACCCGCAGGCGAACTACCAC
CCCTGGCTCGCGGAGGACGCCAAGATTCCGTTCCGCTACGGCGACTACAGCGCGATCAAGCGCCGCTACCTG
CCGGCGGACTACTTCggCGACGTCGGCGCACACAGGGTGGTCGAGACGGTCTACGTGGAAACCGAGTGGGAC
CCGCGCGATCCGCTCGGCGAAACCCGCTTCGTGCATCACCTCGCCGAACGCCATGGCGCGCCCCACGCAGTG
GTGGCGCAGGCCTGGCTGGACGCGCCGGACGCCGCCGAGGTGCTGGCGGCGCAGGCGGGCTTCGCACGGGTC
CGCAGCGTCCGCCACAAGCCCGGCGGTCCGCAACGCCCGCAACAGGTCGGCGAGCTGCGCAGCCTGATGAGC
GACGAGCGCTGGCGTCGCGGCTATGCCGAGCTGGCCCGGCACGGCCTGCACTTCGACCTGCAGACACCCTGG
TGGAACCTCGCCGAGGCCGCATGCCTGGCGCGCGACTTCCCCGATACGCTGATCGTGCTCAACCATGCCGGC
CTGCCGTCCGATCGCAGCGAGGAGGGGCTGGCCGCCTGGCAACGGGCCATGGCGCGCTTCGCCGAATGCCCC
AACGTGGCGTTGAAGATCTCCGGCATCGGCCAGGCCGGCCGGCGCTGGAGCGTCGAGGACAACGCCTGGATC
GTCCGCGAAAGCATCGCCCTGTTCGGCGTCGAGCGGGCGATGTTCGCCAGCAACTTCCCGGTGGACAGCCTG
TGCGGCTCGTTCGACGACATCTATGGCGGTTTCAAACGCATCGTCGCCGACCTGCCGTACGCCGACCAGGAA
CGGCTTTTCCATAGCAACGCGCGGCGCATCTACCGCACCGTACCCGACACCGTGCGCCTGCAGCAGGCGTCG
CTCGACCCGAGGACTTCCCCATGA
Translation:
MAELYDGPIVDAHHHFWDPQANYHPWLAEDAKIPFRYGDYSAIKRRYLPADYFGDVGAHRVVETVYVETEWD
PRDPLGETRFVHHLAERHGAPHAVVAQAWLDAPDAAEVLAAQAGFARVRSVRHKPGGPQRPQQVGELRSLMS
DERWRRGYAELARHGLHFDLQTPWWNLAEAACLARDFPDTLIVLNHAGLPSDRSEEGLAAWQRAMARFAECP
NVALKISGIGQAGRRWSVEDNAWIVRESIALFGVERAMFASNFPVDSLCGSFDDIYGGFKRIVADLPYADQE
RLFHSNARRIYRTVPDTVRLQQASLDPRTSP*
AnnotationID:2073GeneID:2065
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 20:08:04
Gene Name:
Confidence Code:3
GeneProduct:putative hydrolase
Cell Localization:()
Synonyms:PA2211
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs: COG3618
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG3618, Predicted metal-dependent hydrolase of the TIM-barrel fold
CD-Length = 279 residues, 100.0% aligned
Score =  272 bits (697), Expect = 4e-74
Identities = 108/303 (35%), Positives = 136/303 (44%), Gaps = 25/303 (8%)
Genomic Context:
Comment:
ReferenceID:4133
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21279
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32545
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2065_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2065

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3564 PA2211_tr translation of PA2211 319 99.68 99.68 0 1717.0
109793 gb|AAG05599.1|AE004647_8 (AE004647) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 319 99.68 99.68 0 1717.0
109795 dbj|BAB52155.1| (AP003007) hypothetical protein [Mesorhizobium loti] 320 39.06 52.81 24 609.0
109796 emb|CAD31485.1| (AL672112) HYPOTHETICAL CONSERVED PROTEIN [Mesorhizobium loti] 327 37.92 53.21 38 606.0
109794 gb|AAB91771.1| (AE000085) Y4mH [Rhizobium sp. NGR234] 329 37.38 52.58 42 615.0
GC ORFID: 45067How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2211Glimmer Score:
Start: 1735161Stop: 1736120
Length: 960
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2211 translation of PA2211Homolog Bit Score 665.0
Other Homologs: t_PA2211 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTGAGCTGTACGACGGGCCGATCGTCGACGCCCATCATCATTTCTGGGACCCGCAGGCGAACTACCAC
CCCTGGCTCGCGGAGGACGCCAAGATTCCGTTCCGCTACGGCGACTACAGCGCGATCAAGCGCCGCTACCTG
CCGGCGGACTACTTCggCGACGTCGGCGCACACAGGGTGGTCGAGACGGTCTACGTGGAAACCGAGTGGGAC
CCGCGCGATCCGCTCGGCGAAACCCGCTTCGTGCATCACCTCGCCGAACGCCATGGCGCGCCCCACGCAGTG
GTGGCGCAGGCCTGGCTGGACGCGCCGGACGCCGCCGAGGTGCTGGCGGCGCAGGCGGGCTTCGCACGGGTC
CGCAGCGTCCGCCACAAGCCCGGCGGTCCGCAACGCCCGCAACAGGTCGGCGAGCTGCGCAGCCTGATGAGC
GACGAGCGCTGGCGTCGCGGCTATGCCGAGCTGGCCCGGCACGGCCTGCACTTCGACCTGCAGACACCCTGG
TGGAACCTCGCCGAGGCCGCATGCCTGGCGCGCGACTTCCCCGATACGCTGATCGTGCTCAACCATGCCGGC
CTGCCGTCCGATCGCAGCGAGGAGGGGCTGGCCGCCTGGCAACGGGCCATGGCGCGCTTCGCCGAATGCCCC
AACGTGGCGTTGAAGATCTCCGGCATCGGCCAGGCCGGCCGGCGCTGGAGCGTCGAGGACAACGCCTGGATC
GTCCGCGAAAGCATCGCCCTGTTCGGCGTCGAGCGGGCGATGTTCGCCAGCAACTTCCCGGTGGACAGCCTG
TGCGGCTCGTTCGACGACATCTATGGCGGTTTCAAACGCATCGTCGCCGACCTGCCGTACGCCGACCAGGAA
CGGCTTTTCCATAGCAACGCGCGGCGCATCTACCGCACCGTACCCGACACCGTGCGCCTGCAGCAGGCGTCG
CTCGACCCGAGGACTTCCCCATGA