ViewGene
Locus Name:
GeneID:
Location:

GeneID:2064
TrivialName: PA14_40840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40840
PAO1 Ortholog Locus:PA1832
Sequence Length:1026
Protein Length:341
Start: 3644249
Stop: 3643224
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05221.1|AE004609_8 (AE004609) probable protease [Pseudomonas aeruginosa PAO1]
Identities = 341/341 (100%), Positives = 341/341 (100%)
Sequence:
GTGGAGTTCATTGCCGAATATGCGGGCTTTCTGGCCAGGACCGTGACCGTGCTGGCGGCGATCATCGTGGTG
CTGGTGGTGATCGTCGCCCTGCGCGGCCGCGGCCGGCGCGGCGCAGGCGGGCACCTCGACGTGCAGAAACTC
AACGATTTCTACAAGGACCTGCGCGAGCGGGTCCGTCACAGCGTCCTCGACAAGGCCAGCCTCAAGGCCTTG
CGCAAGGAGGAGAGCAAGGCGGCGAAGCAGGCGAAGAAACATCCTGAACAGAAGTCGCGGGTCTACGTGCTC
GATTTCGACGGCGACATCAAGGCCTCGGCTACCGAGCAACTGCGCCACGAAGTGACTGCGGTGCTGAGCATG
GCGGGCAAGGACGACGAGGTGGTGCTGCGCCTGGAAAGCGGCGGTGGCATGGTCCATGGCTACGGCCTGGCG
GCCTCGCAACTGGCGCGCATCCGCCAGGCCGGCGTGCCGCTGACCGTGTGCGTCGACAAGGTGGCGGCCAGC
GGCGGCTACATGATGGCCTGCATCGGCGATCGGATCCTTTCCGCGCCCTTCGCCATCCTCGGCTCGATCGGC
GTGGTGGCGCAGTTGCCCAACGTCCACCGGCTGTTGAAGAAGCACGATATTGACTTCGAGGTGCTTACCGCT
GGCGAATACAAGCGTACGCTGACGGTATTCGGCGAGAACACCGAGAAGGGCCGGGAAAAGTTCCAGGAGGAC
CTGGAGGTGACCCACGAACTGTTCAAGAACTTCGTGGCCCACTACCGGCCGCAACTGAACATGGACGAGATC
GCCACCGGCGAGGTCTGGCTGGGCCAGGCCGCACTGGGCAAGCTGCTGGTGGACGAACTCAAGACCAGCGAC
GAGTACCTGGCCGAGCAGGCCAGGGAGCGCGATGTCTACCAGGTGCAATTCGTCGAGCGCAAGAGCCTGCAG
GAACGCGTCGGCCTGGCCGCCAGCGTGGTTATCGACCGCGTGCTGGTGACCTGGTGGGGGCGGCTCAACCAG
CAGAAGTTCTGGCAATAG
Translation:
MEFIAEYAGFLARTVTVLAAIIVVLVVIVALRGRGRRGAGGHLDVQKLNDFYKDLRERVRHSVLDKASLKAL
RKEESKAAKQAKKHPEQKSRVYVLDFDGDIKASATEQLRHEVTAVLSMAGKDDEVVLRLESGGGMVHGYGLA
ASQLARIRQAGVPLTVCVDKVAASGGYMMACIGDRILSAPFAILGSIGVVAQLPNVHRLLKKHDIDFEVLTA
GEYKRTLTVFGENTEKGREKFQEDLEVTHELFKNFVAHYRPQLNMDEIATGEVWLGQAALGKLLVDELKTSD
EYLAEQARERDVYQVQFVERKSLQERVGLAASVVIDRVLVTWWGRLNQQKFWQ*
AnnotationID:2072GeneID:2064
AnnotatorUID: diggins
Modification Date/Time: 2005-03-01 21:09:01
Gene Name:
Confidence Code:3
GeneProduct:putative protease
Cell Localization:()
Synonyms:sohB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:putative sohB protein, peptidase U7 family
Functional Category Confidence Code:5
COGs:COG0616,pfam01343
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56229.1| (AE016865) peptidase, U7 family [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 340

 Score =  519 bits (1337), Expect = e-147
 Identities = 253/340 (74%), Positives = 301/340 (88%)

>gb|AAN69516.1|AE016585_8 (AE016788) sohB protein, peptidase U7 family [Pseudomonas putida
           KT2440]
          Length = 339

 Score =  491 bits (1264), Expect = e-138
 Identities = 242/337 (71%), Positives = 295/337 (87%), Gaps = 1/337 (0%)

>gb|AAO11314.1|AE016807_33 (AE016807) Periplasmic serine proteases [Vibrio vulnificus CMCP6]
          Length = 353

 Score =  339 bits (869), Expect = 2e-92
 Identities = 169/343 (49%), Positives = 246/343 (71%), Gaps = 16/343 (4%)






 
Structural Features:
COG0616, SppA, Periplasmic serine proteases (ClpP class) 
[Posttranslational modification, protein turnover, chaperones / 
Intracellular trafficking and secretion]
CD-Length = 317 residues,  97.5% aligned
Score =  216 bits (550), Expect = 4e-57
Identities = 102/310 (32%), Positives = 151/310 (48%), Gaps = 13/310 (4%)

pfam01343, Peptidase_S49, Peptidase family S49.
CD-Length = 154 residues,  99.4% aligned
Score =  142 bits (360), Expect = 5e-35
Identities = 59/153 (38%), Positives = 83/153 (54%), Gaps = 2/153 (1%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14495




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21277




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37093




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2064_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2064
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3563
                           PA1832_tr
                           translation of PA1832
                           341
                           99.99
                           99.99
                           0
                           1717.0
     

     
     
109759
                           gb|AAG05221.1|AE004609_8
                           (AE004609) probable protease [Pseudomonas aeruginosa PAO1]
                           341
                           99.70
                           99.99
                           0
                           1714.0
     

     
     
109760
                           gb|AAO56229.1|
                           (AE016865) peptidase, U7 family [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           73.90
                           88.26
                           1
                           1333.0
     

     
     
109761
                           gb|AAN69516.1|AE016585_8
                           (AE016788) sohB protein, peptidase U7 family [Pseudomonas putida KT2440]
                           342
                           70.46
                           86.54
                           4
                           1262.0
     

     
     
109769
                           gb|AAP16772.1|
                           (AE016982) putative protease [Shigella flexneri 2a str. 2457T]
                           353
                           50.70
                           67.70
                           16
                           853.0
     

     






      

          
GC ORFID: 45066How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1832Glimmer Score: 

          
Start: 1309661Stop: 1310686

          
Length: 1026


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1832 translation of PA1832Homolog Bit Score 665.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1383 (ORF: BLASTX 522.0), t_PA1832 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAGTTCATTGCCGAATATGCGGGCTTTCTGGCCAGGACCGTGACCGTGCTGGCGGCGATCATCGTGGTG 
CTGGTGGTGATCGTCGCCCTGCGCGGCCGCGGCCGGCGCGGCGCAGGCGGGCACCTCGACGTGCAGAAACTC 
AACGATTTCTACAAGGACCTGCGCGAGCGGGTCCGTCACAGCGTCCTCGACAAGGCCAGCCTCAAGGCCTTG 
CGCAAGGAGGAGAGCAAGGCGGCGAAGCAGGCGAAGAAACATCCTGAACAGAAGTCGCGGGTCTACGTGCTC 
GATTTCGACGGCGACATCAAGGCCTCGGCTACCGAGCAACTGCGCCACGAAGTGACTGCGGTGCTGAGCATG 
GCGGGCAAGGACGACGAGGTGGTGCTGCGCCTGGAAAGCGGCGGTGGCATGGTCCATGGCTACGGCCTGGCG 
GCCTCGCAACTGGCGCGCATCCGCCAGGCCGGCGTGCCGCTGACCGTGTGCGTCGACAAGGTGGCGGCCAGC 
GGCGGCTACATGATGGCCTGCATCGGCGATCGGATCCTTTCCGCGCCCTTCGCCATCCTCGGCTCGATCGGC 
GTGGTGGCGCAGTTGCCCAACGTCCACCGGCTGTTGAAGAAGCACGATATTGACTTCGAGGTGCTTACCGCT 
GGCGAATACAAGCGTACGCTGACGGTATTCGGCGAGAACACCGAGAAGGGCCGGGAAAAGTTCCAGGAGGAC 
CTGGAGGTGACCCACGAACTGTTCAAGAACTTCGTGGCCCACTACCGGCCGCAACTGAACATGGACGAGATC 
GCCACCGGCGAGGTCTGGCTGGGCCAGGCCGCACTGGGCAAGCTGCTGGTGGACGAACTCAAGACCAGCGAC 
GAGTACCTGGCCGAGCAGGCCAGGGAGCGCGATGTCTACCAGGTGCAATTCGTCGAGCGCAAGAGCCTGCAG 
GAACGCGTCGGCCTGGCCGCCAGCGTGGTTATCGACCGCGTGCTGGTGACCTGGTGGGGGCGGCTCAACCAG 
CAGAAGTTCTGGCAATAG