ViewGene

Locus Name:
GeneID:
Location:

GeneID: 2063

TrivialName: PA14_41630

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_41630

PAO1 Ortholog Locus: PA1773

Sequence Length: 999

Protein Length: 332

Start: 3716398

Stop: 3715400

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05162.1|AE004603_2 (AE004603) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 332/332 (100%), Positives = 332/332 (100%)

Sequence:

ATGCAAGCGTACGAGTCGGGTGACGAGCGCGGCTTGATCTATGGCTACGTCCTCAACGGGCGCGGCGGCGGA
CGCCGTGTCGGACGCAACCAGATAGCGGTGCTCGACCTGCTGCCGGAGGAGAGCCTTTGGCTGCACTGGGAC
CGCGGCGTACCGGAAGCGCAGGCCTGGCTGCGGGATTCCGCGGGGCTCAGCGAGTTCGCCTGCGATCTGCTG
CTGGAGGAGGCGACTCGCCCCCGTTTGCTCGATCTCGGGGCCGAAAGCCTGCTGGTGTTCCTCCGTGGAGTG
AACCTGAATCCGGGCGCGGAGCCGGAAGACATGGTTTCGCTGCGGGTATTCGCCGACGCGCGCCGGGTGATC
TCGCTGCGCCTGCGGCCGCTGAAGGCGGTGGCCGATCTGCTCGAGGACCTGGAGGCGGGGAAAGGGCCGAAG
ACGGCATCCGAGGTCGTGTACTACCTCGCGCACTACCTGACCGATCGCGTCGACACGCTGATCAGCGGGATA
GCCGACCAGCTCGATGCTGTCGAGGAACTGGTCGAGGCGGACGAGCGCGCCAGTCCCGACCAGCACCAGTTG
CGTACCCTGCGCCGCCGGTCGGCGGGGTTGCGGCGCTACCTGGCGCCGCAGCGGGATATCTACTCGCAACTG
GCGCGCTACAAGCTGTCCTGGTTCGTCGAGGACGACGCCGATTACTGGAACGAGCTGAACAACCGGCTGACG
CGGAATCTCGAAGAGCTCGAGTTGATACGGGAGCGCATCAGCGTCCTGCAGGAAGCCGAGTCGCGGCGAATC
ACCGAACGGATGAACCGCACCATGTATCTCCTTGGTATAATCACCGGCTTTTTCCTGCCGATGAGCTTCGTC
ACCGGCCTGCTGGGAATCAATGTCGGCGGCATTCCGGGGGCGGATGCACCGCATGGGTTCTGGCTGGCCTGC
CTGCTGATCGGCGGGGTCGCCACCTTCCAGTGGTGGGTATTTCGTCGGCTGCGCTGGCTCTGA

Translation:

MQAYESGDERGLIYGYVLNGRGGGRRVGRNQIAVLDLLPEESLWLHWDRGVPEAQAWLRDSAGLSEFACDLL
LEEATRPRLLDLGAESLLVFLRGVNLNPGAEPEDMVSLRVFADARRVISLRLRPLKAVADLLEDLEAGKGPK
TASEVVYYLAHYLTDRVDTLISGIADQLDAVEELVEADERASPDQHQLRTLRRRSAGLRRYLAPQRDIYSQL
ARYKLSWFVEDDADYWNELNNRLTRNLEELELIRERISVLQEAESRRITERMNRTMYLLGIITGFFLPMSFV
TGLLGINVGGIPGADAPHGFWLACLLIGGVATFQWWVFRRLRWL*

AnnotationID:2071 GeneID:2063

AnnotatorUID: diggins

Modification Date/Time: 2005-03-01 09:09:58

Gene Name:

Confidence Code: 3

GeneProduct: putative cytoplasmic membrane-associated protein

Cell Localization: ()

Synonyms: cmaX

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (15) Membrane proteins

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG0598

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO55809.1| (AE016864) cmaX protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 331

 Score =  432 bits (1112), Expect = e-120
 Identities = 209/328 (63%), Positives = 257/328 (78%)

>gb|AAD45980.1| (AF115334) CmaX [Pseudomonas fluorescens]
          Length = 331

 Score =  428 bits (1100), Expect = e-119
 Identities = 207/328 (63%), Positives = 258/328 (78%)

>gb|AAN67699.1|AE016401_2 (AE016781) cmaX protein [Pseudomonas putida KT2440]
          Length = 332

 Score =  417 bits (1073), Expect = e-116
 Identities = 203/332 (61%), Positives = 260/332 (78%)

Structural Features:

COG0598, CorA, Mg2+ and Co2+ transporters 
[Inorganic ion transport and metabolism]
CD-Length = 322 residues, 100.0% aligned
Score =  226 bits (576), Expect = 4e-60
Identities = 102/325 (31%), Positives = 166/325 (51%), Gaps = 4/325 (1%)

Genomic Context:

Comment:

ReferenceID:4129

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:21275

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:37149

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 2063_cdd.html

URL:

Homologs By Global Alignment

Gene ID:2063

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

3562 PA1773_tr translation of PA1773 332 99.99 99.99 0 1715.0

109754 gb|AAG05162.1|AE004603_2 (AE004603) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 332 99.99 99.99 0 1715.0

109755 gb|AAD11565.1| (AF027290) putative cytoplasmic membrane-associated protein [Pseudomonas aeruginosa] 332 99.99 99.99 0 1715.0

109756 gb|AAO55809.1| (AE016864) cmaX protein [Pseudomonas syringae pv. tomato str. DC3000] 332 62.95 77.40 1 1107.0

109757 gb|AAD45980.1| (AF115334) CmaX [Pseudomonas fluorescens] 332 62.34 77.71 1 1096.0

GC ORFID: `45065`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1773`	Glimmer Score:
Start: `1237511`	Stop: `1238509`
Length: `999`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1773 translation of PA1773`	Homolog Bit Score `665.0`
Other Homologs: `psyr_15may02_Scaffold1_revised_gene1069 (ORF: BLASTX 423.0), t_PA1773 (ORF: GLIMMER)`
GC ORF Sequence
ATGCAAGCGTACGAGTCGGGTGACGAGCGCGGCTTGATCTATGGCTACGTCCTCAACGGGCGCGGCGGCGGA CGCCGTGTCGGACGCAACCAGATAGCGGTGCTCGACCTGCTGCCGGAGGAGAGCCTTTGGCTGCACTGGGAC CGCGGCGTACCGGAAGCGCAGGCCTGGCTGCGGGATTCCGCGGGGCTCAGCGAGTTCGCCTGCGATCTGCTG CTGGAGGAGGCGACTCGCCCCCGTTTGCTCGATCTCGGGGCCGAAAGCCTGCTGGTGTTCCTCCGTGGAGTG AACCTGAATCCGGGCGCGGAGCCGGAAGACATGGTTTCGCTGCGGGTATTCGCCGACGCGCGCCGGGTGATC TCGCTGCGCCTGCGGCCGCTGAAGGCGGTGGCCGATCTGCTCGAGGACCTGGAGGCGGGGAAAGGGCCGAAG ACGGCATCCGAGGTCGTGTACTACCTCGCGCACTACCTGACCGATCGCGTCGACACGCTGATCAGCGGGATA GCCGACCAGCTCGATGCTGTCGAGGAACTGGTCGAGGCGGACGAGCGCGCCAGTCCCGACCAGCACCAGTTG CGTACCCTGCGCCGCCGGTCGGCGGGGTTGCGGCGCTACCTGGCGCCGCAGCGGGATATCTACTCGCAACTG GCGCGCTACAAGCTGTCCTGGTTCGTCGAGGACGACGCCGATTACTGGAACGAGCTGAACAACCGGCTGACG CGGAATCTCGAAGAGCTCGAGTTGATACGGGAGCGCATCAGCGTCCTGCAGGAAGCCGAGTCGCGGCGAATC ACCGAACGGATGAACCGCACCATGTATCTCCTTGGTATAATCACCGGCTTTTTCCTGCCGATGAGCTTCGTC ACCGGCCTGCTGGGAATCAATGTCGGCGGCATTCCGGGGGCGGATGCACCGCATGGGTTCTGGCTGGCCTGC CTGCTGATCGGCGGGGTCGCCACCTTCCAGTGGTGGGTATTTCGTCGGCTGCGCTGGCTCTGA