ViewGene
Locus Name:
GeneID:
Location:

GeneID:2062
TrivialName: PA14_44400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44400
PAO1 Ortholog Locus:PA1552
Sequence Length:957
Protein Length:318
Start: 3953010
Stop: 3953966
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04941.1|AE004583_6 (AE004583) probable cytochrome c [Pseudomonas aeruginosa PAO1]
Identities = 318/318 (100%), Positives = 318/318 (100%)
Sequence:
ATGACGACCTTCTGGAGTCTGTACATTACAGCTCTCACCCTCGGCACCCTGCTGGCGCTGACCTGGCTGATC
TTCGCCACCCGCAAGGGCCAGCGCAGCAGCACCACCGACGAGACCGTGGGCCACTCCTACGACGGCATCGAG
GAGTACGACAACCCGCTGCCGAAGTGGTGGTTCATGCTGTTCGTCGGCACCCTGGTGTTCGCCGTGGGCTAC
CTGGCCCTGTACCCGGGCCTGGGCACCTGGAAAGGCCTGATGCCGGGCTACCAGTCCGCCGACGAATTCGCC
GACAAGGAAAAAGGCTGGACCGGCGTCCACCAGTGGGAAAAGGAAATGGCCAAGGCCGACGAGAAATACGGC
CCGATCTTCGCCAAGTTCGCCGCGATGCCCATCGAGGAAGTCGCCAAGGATCCGCAGGCGGTGAAAATGGGC
GGTCGCCTGTTCGCCTCCAACTGCTCGATCTGCCACGGCTCCGACGCCAAGGGCGCCTACGGCTTCCCCAAC
CTGACCGACGCCGACTGGCGCTGGGGCGGCGAGCCGGAAACCATCAAGACCACCATCATGGCTGGCCGCCAC
GCCGCCATGCCGGCCTGGGGTGAAGTGATCGGCGAGGAAGGCGTGAAGAACGTCGCCGCTTTCGTCCTCACC
CAGATGGATGGCCGCAAGCTGCCGGAAGGCGCCAAGGCAGACATCGAGGCCGGCAAGCAGGTCTTCGCCACC
ACCTGCGTCGCCTGCCACGGTCCGGAAGGCAAGGGCACCCCAGCGATGGGCGCTCCCGATCTGACCCACCCC
GGCGCGTTCATCTACGGCTCCAGCTTCGCGCAACTGCAGCAGACCATCCGCTACGGTCGCCAGGGCGTGATG
CCGGCGCAACAGGAACACCTGGGCAACGACAAGGTGCACCTGCTGGCCGCCTACGTATACAGCCTGTCGCAC
GGCGAGAAGAGCGCCGAATAA
Translation:
MTTFWSLYITALTLGTLLALTWLIFATRKGQRSSTTDETVGHSYDGIEEYDNPLPKWWFMLFVGTLVFAVGY
LALYPGLGTWKGLMPGYQSADEFADKEKGWTGVHQWEKEMAKADEKYGPIFAKFAAMPIEEVAKDPQAVKMG
GRLFASNCSICHGSDAKGAYGFPNLTDADWRWGGEPETIKTTIMAGRHAAMPAWGEVIGEEGVKNVAAFVLT
QMDGRKLPEGAKADIEAGKQVFATTCVACHGPEGKGTPAMGAPDLTHPGAFIYGSSFAQLQQTIRYGRQGVM
PAQQEHLGNDKVHLLAAYVYSLSHGEKSAE*
AnnotationID:2070GeneID:2062
AnnotatorUID: danlee
Modification Date/Time: 2006-02-03 14:02:48
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c oxidase, cbb3-type, subunit III
Cell Localization:()
Synonyms:PA1552, ccoP
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2010
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69838.1|AE016622_15 (AE016790) cytochrome c oxidase, cbb3-type, subunit III
           [Pseudomonas putida KT2440]
          Length = 325

 Score =  545 bits (1404), Expect = e-154
 Identities = 249/323 (77%), Positives = 286/323 (88%), Gaps = 5/323 (1%)

>gb|AAO55519.1| (AE016862) cytochrome c oxidase, cbb3-type, subunit III
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 325

 Score =  501 bits (1289), Expect = e-141
 Identities = 225/323 (69%), Positives = 276/323 (85%), Gaps = 5/323 (1%)

>dbj|BAC59804.1| (AP005078) cytochrome c oxidase, subunit CcoP [Vibrio
           parahaemolyticus]
          Length = 324

 Score =  290 bits (743), Expect = 6e-78
 Identities = 155/328 (47%), Positives = 205/328 (62%), Gaps = 20/328 (6%)






 
Structural Features:
COG2010, CccA, Cytochrome c, mono- and diheme variants 
[Energy production and conversion]
CD-Length = 150 residues,  94.0% aligned
Score = 79.3 bits (194), Expect = 5e-16
Identities = 38/145 (26%), Positives = 58/145 (40%), Gaps = 9/145 (6%)







   
Genomic Context:






   
Comment:


















    ReferenceID:4127




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21273




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37319




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2062_cdd.html


    		




 
URL:

















    ReferenceID:37917




  
Author/Investigator(s):
        Thony-Meyer L, Beck C, Preisig O, Hennecke H.





  
Title:
        The ccoNOQP gene cluster codes for a cb-type cytochrome oxidase that functions in aerobic respiration of Rhodobacter capsulatus.




  
PubMed:
        7891558


MedLine:
        




    
Source:
Mol Microbiol. 1994 Nov;14(4):705-16.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7891558

















    ReferenceID:37928




  
Author/Investigator(s):
        Preisig O, Anthamatten D, Hennecke H.





  
Title:
        Genes for a microaerobically induced oxidase complex in Bradyrhizobium japonicum are essential for a nitrogen-fixing endosymbiosis.




  
PubMed:
        8386371


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3309-13.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=8386371









           
Homologs By Global Alignment 

           

       



     
Gene ID:2062
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3560
                           PA1552_tr
                           translation of PA1552
                           318
                           99.99
                           99.99
                           0
                           1717.0
     

     
     
109739
                           gb|AAG04941.1|AE004583_6
                           (AE004583) probable cytochrome c [Pseudomonas aeruginosa PAO1]
                           318
                           99.99
                           99.99
                           0
                           1717.0
     

     
     
109740
                           gb|AAN69838.1|AE016622_15
                           (AE016790) cytochrome c oxidase, cbb3-type, subunit III [Pseudomonas putida KT2440]
                           325
                           76.61
                           88.00
                           7
                           1408.0
     

     
     
109741
                           gb|AAN69833.1|AE016622_10
                           (AE016790) cytochrome c oxidase, cbb3-type, subunit III [Pseudomonas putida KT2440]
                           323
                           74.30
                           86.06
                           15
                           1350.0
     

     
     
109743
                           gb|AAG04944.1|AE004583_9
                           (AE004583) probable cytochrome c [Pseudomonas aeruginosa PAO1]
                           318
                           70.75
                           85.22
                           10
                           1286.0
     

     






      

          
GC ORFID: 45064How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1552Glimmer Score: 

          
Start: 1000899Stop: 999943

          
Length: 957


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1552 translation of PA1552Homolog Bit Score 665.0

          
Other Homologs:  t_PA1555 (ORF: BLASTX 498.0), psyr_15may02_Scaffold8_revised_gene7528 (ORF: BLASTX 493.0), t_PA1552 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACGACCTTCTGGAGTCTGTACATTACAGCTCTCACCCTCGGCACCCTGCTGGCGCTGACCTGGCTGATC 
TTCGCCACCCGCAAGGGCCAGCGCAGCAGCACCACCGACGAGACCGTGGGCCACTCCTACGACGGCATCGAG 
GAGTACGACAACCCGCTGCCGAAGTGGTGGTTCATGCTGTTCGTCGGCACCCTGGTGTTCGCCGTGGGCTAC 
CTGGCCCTGTACCCGGGCCTGGGCACCTGGAAAGGCCTGATGCCGGGCTACCAGTCCGCCGACGAATTCGCC 
GACAAGGAAAAAGGCTGGACCGGCGTCCACCAGTGGGAAAAGGAAATGGCCAAGGCCGACGAGAAATACGGC 
CCGATCTTCGCCAAGTTCGCCGCGATGCCCATCGAGGAAGTCGCCAAGGATCCGCAGGCGGTGAAAATGGGC 
GGTCGCCTGTTCGCCTCCAACTGCTCGATCTGCCACGGCTCCGACGCCAAGGGCGCCTACGGCTTCCCCAAC 
CTGACCGACGCCGACTGGCGCTGGGGCGGCGAGCCGGAAACCATCAAGACCACCATCATGGCTGGCCGCCAC 
GCCGCCATGCCGGCCTGGGGTGAAGTGATCGGCGAGGAAGGCGTGAAGAACGTCGCCGCTTTCGTCCTCACC 
CAGATGGATGGCCGCAAGCTGCCGGAAGGCGCCAAGGCAGACATCGAGGCCGGCAAGCAGGTCTTCGCCACC 
ACCTGCGTCGCCTGCCACGGTCCGGAAGGCAAGGGCACCCCAGCGATGGGCGCTCCCGATCTGACCCACCCC 
GGCGCGTTCATCTACGGCTCCAGCTTCGCGCAACTGCAGCAGACCATCCGCTACGGTCGCCAGGGCGTGATG 
CCGGCGCAACAGGAACACCTGGGCAACGACAAGGTGCACCTGCTGGCCGCCTACGTATACAGCCTGTCGCAC 
GGCGAGAAGAGCGCCGAATAA