ViewGene

Locus Name:
GeneID:
Location:

GeneID:2061
TrivialName: PA14_16950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16950
PAO1 Ortholog Locus:PA3666
Sequence Length:1035
Protein Length:344
Start: 1453275
Stop: 1452241
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07054.1|AE004786_6 (AE004786) tetrahydrodipicolinate succinylase [Pseudomonas aeruginosa PAO1]
Identities = 343/344 (99%), Positives = 343/344 (99%)
Sequence:
ATGTCGCAATCCCTGTTCAGCCTGGCCTTCGGCGTCGGCACCCAGAACCGCCAGGAAGCCTGGCTGGAAGTG
TTCTACGCGCTGCCGCTGCTCAAGCCTTCGAGCGAAATCGTCGCTGCCGTCGCACCGATCCTTGGCTACGCA
GCCGGCAACCAGGCGCTGACCTTCACTTCGCAGCAGGCCTACCAGCTGGCCGACGCCCTGAAGGGTATCGAC
GCCGCTCAGTCGGCCCTGCTCTCGCGCCTGGCGGAAAGCCAGAAGCCGCTGGTCGCCACCCTGTTGGCGGAA
GACGCCGCGCCGTCCTCCACCCCGGAGGCCTACCTCAAGCTGCACCTGCTCTCCCACCGCTTGGTCAAACCG
CACGCTGTGAACCTGAGCGGCATCTTCCCGCTCCTGCCGAACGTGGCCTGGACCAACATCGGCGCGGTGGAC
CTGGCCGAACTGGCCGAACTGCAACTGGAAGCGCGACTGAAGGGCAAGCTGCTGGAAGTCTTCTCCGTCGAC
AAGTTCCCGAAGATGACCGACTACGTGGTCCCGGCCGGCGTACGCATCGCCGACACCGCCCGCGTGCGTCTG
GGCGCCTACATCGGTGAAGGCACCACGGTGATGCACGAAGGTTTCGTCAACTTCAACGCCGGCACCGAAGGC
CCGGGCATGATCGAAGGTCGCGTATCCGCCGGCGTGTTCGTCGGCAAGGGGTCGGACCTGGGCGGCGGCTGC
TCGACCATGGGCACCCTTTCCGGTGGCGGCAACATCGTCATCAGCGTCGGCGAAGGCTGCCTGATCGGCGCC
AACGCCGGCATCGGCATCCCGCTGGGCGATCGCAACATCGTCGAGGCCGGCCTGTACATCACCGCCGGCACC
AAGGTCGCCCTGCTCGACGAGCAGAACGCTCTGGTGAAAGTGGTCAAGGCCCGCGACCTGGCCGGTCAGCCC
GACCTGCTGTTCCGCCGCAACTCGCAGAACGGTGCGGTGGAGTGCAAGACCAACAAGACCGCCATCGAGCTG
AACGAAGCGCTGCACGCGCACAACTGA
Translation:
MSQSLFSLAFGVGTQNRQEAWLEVFYALPLLKPSSEIVAAVAPILGYAAGNQALTFTSQQAYQLADALKGID
AAQSALLSRLAESQKPLVATLLAEDAAPSSTPEAYLKLHLLSHRLVKPHAVNLSGIFPLLPNVAWTNIGAVD
LAELAELQLEARLKGKLLEVFSVDKFPKMTDYVVPAGVRIADTARVRLGAYIGEGTTVMHEGFVNFNAGTEG
PGMIEGRVSAGVFVGKGSDLGGGCSTMGTLSGGGNIVISVGEGCLIGANAGIGIPLGDRNIVEAGLYITAGT
KVALLDEQNALVKVVKARDLAGQPDLLFRRNSQNGAVECKTNKTAIELNEALHAHN*
AnnotationID:2069GeneID:2061
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 09:09:54
Gene Name:dapD
Confidence Code:2
GeneProduct:tetrahydrodipicolinate N-succinyletransferase
Cell Localization:(1) Cytoplasmic
Synonyms:
Cell Localization Confidence Code:2
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2171
Secondary Functional Category(ies):
EC Number:2.3.1.117
Status:ACTIVE
Pathway:
Amino-acid biosynthesis; 
L-lysine biosynthesis via DAP;
LL-diaminopimelate from tetrahydrodipicolinate (succinylase route): step 1.
Homology:
>dbj|BAA75918.1| (AB024603) tetrahydrodipicolinate N-succinyltransferase
           [Burkholderia cepacia]
          Length = 344

 Score =  601 bits (1549), Expect = e-171
 Identities = 305/344 (88%), Positives = 323/344 (93%)

>gb|AAF95473.1| (AE004303) 2,3,4,5-tetrahydropyridine-2-carboxylate
           N-succinyltransferase [Vibrio cholerae]
          Length = 343

 Score =  412 bits (1058), Expect = e-114
 Identities = 207/340 (60%), Positives = 249/340 (73%), Gaps = 1/340 (0%)
Structural Features:
COG2171, DapD, Tetrahydrodipicolinate N-succinyltransferase 
[Amino acid transport and metabolism]
CD-Length = 271 residues,  95.9% aligned
Score =  274 bits (701), Expect = 3e-74
Identities = 109/265 (41%), Positives = 138/265 (52%), Gaps = 9/265 (3%)
Genomic Context:
Comment:
ReferenceID:4125
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21271
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31878
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2061_cdd.html
URL:
ReferenceID:34237
Author/Investigator(s): Richaud C, Richaud F, Martin C, Haziza C, Patte JC.
Title: Regulation of expression and nucleotide sequence of the Escherichia coli dapD gene.
PubMed: 6094577
MedLine:
Source:
J Biol Chem. 1984 Dec 10;259(23):14824-8.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=6094577
Homologs By Global Alignment
Gene ID:2061

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3559 PA3666_tr translation of PA3666 344 99.70 99.70 0 1718.0
109715 gb|AAG07054.1|AE004786_6 (AE004786) tetrahydrodipicolinate succinylase [Pseudomonas aeruginosa PAO1] 344 99.70 99.70 0 1718.0
109716 dbj|BAA75911.1| (AB024601) tetrahydrodipicolinate N-succinyletransferase [Pseudomonas aeruginosa] 344 99.70 99.70 0 1718.0
109717 gb|AAN67151.1|AE016344_1 (AE016779) 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase, putative [Pseudomonas putida KT2440] 344 88.66 93.89 0 1549.0
109718 dbj|BAA75918.1| (AB024603) tetrahydrodipicolinate N-succinyltransferase [Burkholderia cepacia] 344 88.66 93.89 0 1549.0
GC ORFID: 45063How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3666Glimmer Score:
Start: 3500662Stop: 3501696
Length: 1035
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3666 translation of PA3666Homolog Bit Score 666.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4803 (ORF: BLASTX 587.0), t_PA3666 (ORF: GLIMMER)
GC ORF Sequence
ATGTCGCAATCCCTGTTCAGCCTGGCCTTCGGCGTCGGCACCCAGAACCGCCAGGAAGCCTGGCTGGAAGTG
TTCTACGCGCTGCCGCTGCTCAAGCCTTCGAGCGAAATCGTCGCTGCCGTCGCACCGATCCTTGGCTACGCA
GCCGGCAACCAGGCGCTGACCTTCACTTCGCAGCAGGCCTACCAGCTGGCCGACGCCCTGAAGGGTATCGAC
GCCGCTCAGTCGGCCCTGCTCTCGCGCCTGGCGGAAAGCCAGAAGCCGCTGGTCGCCACCCTGTTGGCGGAA
GACGCCGCGCCGTCCTCCACCCCGGAGGCCTACCTCAAGCTGCACCTGCTCTCCCACCGCTTGGTCAAACCG
CACGCTGTGAACCTGAGCGGCATCTTCCCGCTCCTGCCGAACGTGGCCTGGACCAACATCGGCGCGGTGGAC
CTGGCCGAACTGGCCGAACTGCAACTGGAAGCGCGACTGAAGGGCAAGCTGCTGGAAGTCTTCTCCGTCGAC
AAGTTCCCGAAGATGACCGACTACGTGGTCCCGGCCGGCGTACGCATCGCCGACACCGCCCGCGTGCGTCTG
GGCGCCTACATCGGTGAAGGCACCACGGTGATGCACGAAGGTTTCGTCAACTTCAACGCCGGCACCGAAGGC
CCGGGCATGATCGAAGGTCGCGTATCCGCCGGCGTGTTCGTCGGCAAGGGGTCGGACCTGGGCGGCGGCTGC
TCGACCATGGGCACCCTTTCCGGTGGCGGCAACATCGTCATCAGCGTCGGCGAAGGCTGCCTGATCGGCGCC
AACGCCGGCATCGGCATCCCGCTGGGCGATCGCAACATCGTCGAGGCCGGCCTGTACATCACCGCCGGCACC
AAGGTCGCCCTGCTCGACGAGCAGAACGCTCTGGTGAAAGTGGTCAAGGCCCGCGACCTGGCCGGTCAGCCC
GACCTGCTGTTCCGCCGCAACTCGCAGAACGGTGCGGTGGAGTGCAAGACCAACAAGACCGCCATCGAGCTG
AACGAAGCGCTGCACGCGCACAACTGA