ViewGene
Locus Name:
GeneID:
Location:

GeneID:206
TrivialName: PA14_50570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_50570
PAO1 Ortholog Locus:PA1069
Sequence Length:2295
Protein Length:764
Start: 4494344
Stop: 4492050
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04458.1|AE004538_10 (AE004538) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 763/764 (99%), Positives = 764/764 (100%)
Sequence:
ATGGATATCTGGAACTGGGTGGAGAAGCTCCGCGCCGACCTGCGTGAGGCCGGCCAGGAGCAGAGTGCGCGG
CTGATCGACGAACTCACCGCGTACGTCTGTGACCTCGAGGTGGAGCGCGCCGAGGCGCTGTTGCCGGAGGTC
AAGGCGCTGAGCCGGACGTTGAACAACCCGTGGCTGGAAATCTTCGTCCGCCACTGGGAGATGCGTAACCGG
GTCGGCAACCAACTGGAGGGCGAGACCGCCCTGGCCGACGCCGTTTCCCTGTTCGAACTGGCCAACCGCGAC
GACACCCAGGCCTGCCCGCAGTCGGTCTGCGTGACCCAGGACCTGGCGTCGTGCTACGCCAACGTCGACGGC
CCGGGCTGGGTGGAAGAACGCATCGAGGTGTGCGACGAGACCCTGGCGCGGATCGACCCGACCTGGGCCTGC
TTCCACTGCCTGAGCAACGAGAAGGCCGAGGCGCTGCTCGACGACGGGCGCGGCGAAGATGCCCTGGCCTTC
CTGGCCGAACAGGAGAAGAAGATCCTCGCCGCCGGCGAGGAGGTATTCGACAGCCTCCTGGAGATGCGCGTG
GCGATCCTGCTGAACCTGGGGCGCGCGGAACAGGCGCTGGCCCTGATCGGCGAGATGGAGGAGAAGGTCGAG
GGCGCGGAGTGGAACAACATCAGCCAGCCGCGGCGTCTGTACAAGGCCCACGGCCTGGCGTTGCTGGGGCGC
GACGAGGAGGCCCTGGAGGCGCTGCTGCCGTTCTCCGAGATTGCCCCGCGCTACCGTACGATCTGGCTGCGC
GCGGTCTACCTGCTGCTGCAACGGACCCCTGAGCGCAACACCTGGGACTTCGGCGGGCGCCTGCAGCAGATG
CTCGAACACTACTCGCAGAAGGGCGCGCACCGAGTGGTCATCGATGTTGCCAGCCAGGCCATCCGCCTCGCG
TTGCAACGCGGTTCGGTATGGAGCGCCAGGCGCCACCTGGCGCTGGCCGAACAGCATGCTCAACAGTTGCAG
CGCGATCGGGGCGCCAGCCAGTTGCTCGCCGGGTTGAGGGAGGAGATCGATGCCGCGCCGCAGCAGCAGGAG
CTGCCGGTGCCGGCTGCGGAGTTGCTCGACTGGCTGGCTGCGCAGGGCAGCGAAGACGCGCCGCGCAACCCG
GAGAAAGAAGTGCAGTGGCTGCTCCAGGCGCTGGCCGAGCGGCCCGACGACACCGCCTTGCGCGAAGTGGCC
GCCTCGGCGCTACAGGCCTGCTCCGCCGACGACGAGGCCATCGACCTGCTCTGGGAGTACGTCGAGCGCCAC
ACCGACGAGGAGCAGCAACTGGCCTACTACCTGCTCAATGCCTTGCTGGCGCGCGGCGAGTACGACCAAGTC
AAGCGCCTCGGCCGGCTCTACGCCGACAGCGTGCCGCTGATCGCGCTGTGGAGCGAAGTCAAGCTGGCCGAG
AAACTCAACGACTGGCCGGAGCTGGAGCGCGCCTGCCAATCGGTGCTGGAAATTTCTCCCGGCTCGCTGGGA
GCCCACAGCCTGCTGGGTAAGGCGCTGATGGAGCAGGATCGCTTCGCCGAGGCGGCGCTGGCCTACCAGCGT
CTGGCCGGCAAGCTGGAGGAGCCGCAGTCGGTGCAGTGGGACCAGATGACCGCCGCCAGCGCCGCGCGCGAC
TGGACGATGCTGCGCGAGGTCGCTGCCGGCATGGGCATGGAGTTCGCCGCCGGCGACGGACCGATCGAGGAA
GACTGGGGCTGGGTGATCGTCCGCTACATCGAGGATGGCGAAGCGCTCGACTACTACGCCCGGCGCACCGGC
CCGGTGACCGCGCGGGTCCTCGAGAACGCGCCGGGCAATCGCAGCCAGCGGGTCGGTGACTGGGTGGTGTTC
GACGCCGGCCTGATCTATCCGGCTCCGGAAGACGAGGAGGAGCGCAAGCGTTTCGTTCCCACCTATGCGGTG
GTGCACGTCCTCGAGAGCGGTGGTTACTCGCCGAGCTGGCTGGTGGACGGCGTCTATCCGGGCGACGAGGCC
TTCGACGCCTTCCGCGAAACGCTCGACGCGCGCGGCTGGAAGGTCTGGGTGCACAGCAACCGCGACTACCAG
GTCACCGATGCCAGCAGCGGCGAGGAACTGCGGGCGATCTACTTCACCGTCGCGACACCTGCGCAGCAGGCG
CCGCGCGACCTGCACCAGGCGTTGCAGGAGGCCACCGGGCAATGGCCGCACCGCATGTGCTGGCTGCGCCTG
GCGGAAGCGGCGGAGGTCGACACCCAGCCGCACCTGGACGCTATCGAGCGCTACGGCCTGTAG
Translation:
MDIWNWVEKLRADLREAGQEQSARLIDELTAYVCDLEVERAEALLPEVKALSRTLNNPWLEIFVRHWEMRNR
VGNQLEGETALADAVSLFELANRDDTQACPQSVCVTQDLASCYANVDGPGWVEERIEVCDETLARIDPTWAC
FHCLSNEKAEALLDDGRGEDALAFLAEQEKKILAAGEEVFDSLLEMRVAILLNLGRAEQALALIGEMEEKVE
GAEWNNISQPRRLYKAHGLALLGRDEEALEALLPFSEIAPRYRTIWLRAVYLLLQRTPERNTWDFGGRLQQM
LEHYSQKGAHRVVIDVASQAIRLALQRGSVWSARRHLALAEQHAQQLQRDRGASQLLAGLREEIDAAPQQQE
LPVPAAELLDWLAAQGSEDAPRNPEKEVQWLLQALAERPDDTALREVAASALQACSADDEAIDLLWEYVERH
TDEEQQLAYYLLNALLARGEYDQVKRLGRLYADSVPLIALWSEVKLAEKLNDWPELERACQSVLEISPGSLG
AHSLLGKALMEQDRFAEAALAYQRLAGKLEEPQSVQWDQMTAASAARDWTMLREVAAGMGMEFAAGDGPIEE
DWGWVIVRYIEDGEALDYYARRTGPVTARVLENAPGNRSQRVGDWVVFDAGLIYPAPEDEEERKRFVPTYAV
VHVLESGGYSPSWLVDGVYPGDEAFDAFRETLDARGWKVWVHSNRDYQVTDASSGEELRAIYFTVATPAQQA
PRDLHQALQEATGQWPHRMCWLRLAEAAEVDTQPHLDAIERYGL*
AnnotationID:216GeneID:206
AnnotatorUID: danlee
Modification Date/Time: 2004-05-19 16:04:57
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA1069
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:415




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:206
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
348
                           PA1069_tr
                           translation of PA1069
                           764
                           99.86
                           99.99
                           0
                           3980.0
     

     
     
21766
                           gb|AAG04458.1|AE004538_10
                           (AE004538) hypothetical protein PA1069 [Pseudomonas aeruginosa PAO1]
                           764
                           99.86
                           99.99
                           0
                           3980.0
     

     
     
21767
                           gb|AAM36139.1|
                           (AE011756) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           777
                           61.00
                           75.67
                           16
                           2535.0
     

     
     
21768
                           gb|AAM40467.1|
                           (AE012215) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           775
                           60.00
                           74.70
                           12
                           2489.0
     

     






      

          
GC ORFID: 43208How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1069Glimmer Score: 

          
Start: 459564Stop: 461858

          
Length: 2295


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1069 translation of PA1069Homolog Bit Score 1537.0

          
Other Homologs:  t_PA1069 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATATCTGGAACTGGGTGGAGAAGCTCCGCGCCGACCTGCGTGAGGCCGGCCAGGAGCAGAGTGCGCGG 
CTGATCGACGAACTCACCGCGTACGTCTGTGACCTCGAGGTGGAGCGCGCCGAGGCGCTGTTGCCGGAGGTC 
AAGGCGCTGAGCCGGACGTTGAACAACCCGTGGCTGGAAATCTTCGTCCGCCACTGGGAGATGCGTAACCGG 
GTCGGCAACCAACTGGAGGGCGAGACCGCCCTGGCCGACGCCGTTTCCCTGTTCGAACTGGCCAACCGCGAC 
GACACCCAGGCCTGCCCGCAGTCGGTCTGCGTGACCCAGGACCTGGCGTCGTGCTACGCCAACGTCGACGGC 
CCGGGCTGGGTGGAAGAACGCATCGAGGTGTGCGACGAGACCCTGGCGCGGATCGACCCGACCTGGGCCTGC 
TTCCACTGCCTGAGCAACGAGAAGGCCGAGGCGCTGCTCGACGACGGGCGCGGCGAAGATGCCCTGGCCTTC 
CTGGCCGAACAGGAGAAGAAGATCCTCGCCGCCGGCGAGGAGGTATTCGACAGCCTCCTGGAGATGCGCGTG 
GCGATCCTGCTGAACCTGGGGCGCGCGGAACAGGCGCTGGCCCTGATCGGCGAGATGGAGGAGAAGGTCGAG 
GGCGCGGAGTGGAACAACATCAGCCAGCCGCGGCGTCTGTACAAGGCCCACGGCCTGGCGTTGCTGGGGCGC 
GACGAGGAGGCCCTGGAGGCGCTGCTGCCGTTCTCCGAGATTGCCCCGCGCTACCGTACGATCTGGCTGCGC 
GCGGTCTACCTGCTGCTGCAACGGACCCCTGAGCGCAACACCTGGGACTTCGGCGGGCGCCTGCAGCAGATG 
CTCGAACACTACTCGCAGAAGGGCGCGCACCGAGTGGTCATCGATGTTGCCAGCCAGGCCATCCGCCTCGCG 
TTGCAACGCGGTTCGGTATGGAGCGCCAGGCGCCACCTGGCGCTGGCCGAACAGCATGCTCAACAGTTGCAG 
CGCGATCGGGGCGCCAGCCAGTTGCTCGCCGGGTTGAGGGAGGAGATCGATGCCGCGCCGCAGCAGCAGGAG 
CTGCCGGTGCCGGCTGCGGAGTTGCTCGACTGGCTGGCTGCGCAGGGCAGCGAAGACGCGCCGCGCAACCCG 
GAGAAAGAAGTGCAGTGGCTGCTCCAGGCGCTGGCCGAGCGGCCCGACGACACCGCCTTGCGCGAAGTGGCC 
GCCTCGGCGCTACAGGCCTGCTCCGCCGACGACGAGGCCATCGACCTGCTCTGGGAGTACGTCGAGCGCCAC 
ACCGACGAGGAGCAGCAACTGGCCTACTACCTGCTCAATGCCTTGCTGGCGCGCGGCGAGTACGACCAAGTC 
AAGCGCCTCGGCCGGCTCTACGCCGACAGCGTGCCGCTGATCGCGCTGTGGAGCGAAGTCAAGCTGGCCGAG 
AAACTCAACGACTGGCCGGAGCTGGAGCGCGCCTGCCAATCGGTGCTGGAAATTTCTCCCGGCTCGCTGGGA 
GCCCACAGCCTGCTGGGTAAGGCGCTGATGGAGCAGGATCGCTTCGCCGAGGCGGCGCTGGCCTACCAGCGT 
CTGGCCGGCAAGCTGGAGGAGCCGCAGTCGGTGCAGTGGGACCAGATGACCGCCGCCAGCGCCGCGCGCGAC 
TGGACGATGCTGCGCGAGGTCGCTGCCGGCATGGGCATGGAGTTCGCCGCCGGCGACGGACCGATCGAGGAA 
GACTGGGGCTGGGTGATCGTCCGCTACATCGAGGATGGCGAAGCGCTCGACTACTACGCCCGGCGCACCGGC 
CCGGTGACCGCGCGGGTCCTCGAGAACGCGCCGGGCAATCGCAGCCAGCGGGTCGGTGACTGGGTGGTGTTC 
GACGCCGGCCTGATCTATCCGGCTCCGGAAGACGAGGAGGAGCGCAAGCGTTTCGTTCCCACCTATGCGGTG 
GTGCACGTCCTCGAGAGCGGTGGTTACTCGCCGAGCTGGCTGGTGGACGGCGTCTATCCGGGCGACGAGGCC 
TTCGACGCCTTCCGCGAAACGCTCGACGCGCGCGGCTGGAAGGTCTGGGTGCACAGCAACCGCGACTACCAG 
GTCACCGATGCCAGCAGCGGCGAGGAACTGCGGGCGATCTACTTCACCGTCGCGACACCTGCGCAGCAGGCG 
CCGCGCGACCTGCACCAGGCGTTGCAGGAGGCCACCGGGCAATGGCCGCACCGCATGTGCTGGCTGCGCCTG 
GCGGAAGCGGCGGAGGTCGACACCCAGCCGCACCTGGACGCTATCGAGCGCTACGGCCTGTAG