ViewGene
Locus Name:
GeneID:
Location:

GeneID:2057
TrivialName: PA14_43190
AnnotatorUID: danlee
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43190
PAO1 Ortholog Locus:PA1648
Sequence Length:1005
Protein Length:334
Start: 3847591
Stop: 3848595
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05037.1|AE004592_8 (AE004592) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 333/334 (99%), Positives = 334/334 (100%)to PA1648 of PAO1.
Sequence:
ATGACCTCCCAGATCAATCGGCAATACCAGTTGGCCCAGCGTCCCAGCGGGCTGCCCGGCCGCGACACCTTC
AGTTTCGTCGAGACCCCGCTCGGCGAGCCGGCCGAGGGCCAGATCCTGGTGAAGAACGAGTACCTGTCGCTG
GACCCGGCGATGCGCGGCTGGATGAACGACGCCCGCTCCTACATCCCGCCGGTGGGGATCGGCGAGGTGATG
CGCGCGCTCGGCGTCGGCAAGGTGCTGGTTTCGAAGCACCCCGGCTTCCAGGCCGGCGACTACGTCAACGGC
GCCCTCGGCGTGCAGGACTATTTCGTCGGCGAGCCCAAGGGTTTCTACAAGGTCGACCCGTCCCGCGCGCCG
CTGCCACGCTATCTCTCGGCGCTGGGCATGACCGGCATGACCGCCTACTTCGCGTTGCTCGACGTCGGCCAg
ccgaAGaaCGGCGAGACCGTGGTGATCTCCGGCGCCGCCGGTGCGGTGGGCAGCGTTGCCGGGCAgaTCGCC
AGGCTCAAGGGCTGCCGGGTGGTGGGCATCGCCGGCGGCGCCGAGAAATGTCGCTTCCTGGTCGAAGAACTG
GGCTTCGACGGCGCCATCGACTACAAGAACGAAGACCTCGCCGCCGGACTCAAGCGCGAATGCCCGAAGGGT
ATCGATGTGTTCTTCGACAACGTCGGCGGCGAAATCCTCGACACGGTGCTCACCCGTATCGCCTTCAAGGCA
CGCATCGTCCTCTGCGGGGCGATCAGCCAGTACAACAACAAGGAAGCGGTGCGCGGCCCGGCCAACTACCTG
TCGCTGCTGGTCAATCGGGCGCGCATGGAAGGCATGGTGGTGATGGACTATGCCCAGCGCTTCCCAGAAGGC
CTGAAGGAGATGGCCACCTGGCTGGCGGAAGGCAAGCTGCAATCGCGCGAGGACATCGTCGAAGGCCTGGAG
ACCTTCCCCGAAACGCTGCTCAAGCTGTTCAGCGGGGAAAACTTCGGCAAGTTGGTGTTGAAGGTCTGA
Translation:
MTSQINRQYQLAQRPSGLPGRDTFSFVETPLGEPAEGQILVKNEYLSLDPAMRGWMNDARSYIPPVGIGEVM
RALGVGKVLVSKHPGFQAGDYVNGALGVQDYFVGEPKGFYKVDPSRAPLPRYLSALGMTGMTAYFALLDVGQ
PKNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGFDGAIDYKNEDLAAGLKRECPKG
IDVFFDNVGGEILDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDYAQRFPEG
LKEMATWLAEGKLQSREDIVEGLETFPETLLKLFSGENFGKLVLKV*
AnnotationID:2065GeneID:2057
AnnotatorUID: danlee
Modification Date/Time: 2005-07-15 15:03:18
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:PA1648
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
100% identical to PA1648 (putative oxidoreductase) of PAO1.






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4117




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21263




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2057
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3554
                           PA1648_tr
                           translation of PA1648
                           334
                           99.70
                           99.99
                           0
                           1719.0
     

     
     
109625
                           gb|AAG05037.1|AE004592_8
                           (AE004592) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           334
                           99.70
                           99.99
                           0
                           1719.0
     

     
     
109626
                           gb|AAN67435.1|AE016371_1
                           (AE016780) alcohol dehydrogenase, zinc-containing [Pseudomonas putida KT2440]
                           334
                           74.85
                           87.72
                           1
                           1346.0
     

     
     
109627
                           gb|AAO55547.1|
                           (AE016863) oxidoreductase, zinc-binding [Pseudomonas syringae pv. tomato str. DC3000]
                           386
                           60.36
                           72.02
                           52
                           1234.0
     

     
     
109628
                           dbj|BAC69078.1|
                           (AP005026) putative oxidoreductase [Streptomyces avermitilis MA-4680]
                           336
                           55.35
                           69.34
                           20
                           962.0
     

     






      

          
GC ORFID: 45059How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1648Glimmer Score: 

          
Start: 1106318Stop: 1105314

          
Length: 1005


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1648 translation of PA1648Homolog Bit Score 666.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene567 (ORF: BLASTX 478.0), t_PA2197 (ORF: BLASTX 310.0), t_PA1648 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCTCCCAGATCAATCGGCAATACCAGTTGGCCCAGCGTCCCAGCGGGCTGCCCGGCCGCGACACCTTC 
AGTTTCGTCGAGACCCCGCTCGGCGAGCCGGCCGAGGGCCAGATCCTGGTGAAGAACGAGTACCTGTCGCTG 
GACCCGGCGATGCGCGGCTGGATGAACGACGCCCGCTCCTACATCCCGCCGGTGGGGATCGGCGAGGTGATG 
CGCGCGCTCGGCGTCGGCAAGGTGCTGGTTTCGAAGCACCCCGGCTTCCAGGCCGGCGACTACGTCAACGGC 
GCCCTCGGCGTGCAGGACTATTTCGTCGGCGAGCCCAAGGGTTTCTACAAGGTCGACCCGTCCCGCGCGCCG 
CTGCCACGCTATCTCTCGGCGCTGGGCATGACCGGCATGACCGCCTACTTCGCGTTGCTCGACGTCGGCCAg 
ccgaAGaaCGGCGAGACCGTGGTGATCTCCGGCGCCGCCGGTGCGGTGGGCAGCGTTGCCGGGCAgaTCGCC 
AGGCTCAAGGGCTGCCGGGTGGTGGGCATCGCCGGCGGCGCCGAGAAATGTCGCTTCCTGGTCGAAGAACTG 
GGCTTCGACGGCGCCATCGACTACAAGAACGAAGACCTCGCCGCCGGACTCAAGCGCGAATGCCCGAAGGGT 
ATCGATGTGTTCTTCGACAACGTCGGCGGCGAAATCCTCGACACGGTGCTCACCCGTATCGCCTTCAAGGCA 
CGCATCGTCCTCTGCGGGGCGATCAGCCAGTACAACAACAAGGAAGCGGTGCGCGGCCCGGCCAACTACCTG 
TCGCTGCTGGTCAATCGGGCGCGCATGGAAGGCATGGTGGTGATGGACTATGCCCAGCGCTTCCCAGAAGGC 
CTGAAGGAGATGGCCACCTGGCTGGCGGAAGGCAAGCTGCAATCGCGCGAGGACATCGTCGAAGGCCTGGAG 
ACCTTCCCCGAAACGCTGCTCAAGCTGTTCAGCGGGGAAAACTTCGGCAAGTTGGTGTTGAAGGTCTGA