ViewGene
Locus Name:
GeneID:
Location:

GeneID:2055
TrivialName: PA14_09770
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09770
PAO1 Ortholog Locus:PA4184
Sequence Length:1023
Protein Length:340
Start: 841579
Stop: 842601
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07571.1|AE004834_11 (AE004834) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 338/340 (99%), Positives = 339/340 (99%)
Sequence:
ATGGAAAGAAGGCGTTTCAGCGCCGCCCTGCAAGGGCAGAACCTCAGGTTCACCGGGGCCGGGGAGGGGGGC
TCGGCACGGGCACGGGTGGGCTTCCTGCTGCTCGAACACTTTTCCCTGCCGGCCTTCACCCAGGCGCTGGAC
ACCCTGGTGACCGCCAACCTGATCCGCAGCGAGTCCTTCGCGGTGAGCAACTTCAGCCTGAGCGGCGAGCCG
GTGACCAGCGACCTCGGGTTGCTGATCTGCCCGGACCTGGCGCTCGCCTCGGCGGCGCGGCAAGGACTCGAC
CTGCTGGTGGTCTGCGGCGGTTTGCGCACGCCCCTGCGCTCGTCCGCCGCGCTGCGGGAAGCGTTGCAGGAC
GTGGCGTCGCGCGGCGTCGCCCTGGCCGGGCTGTGGAACGGTGCCTGGTTCCTCGGCGACGCCGGCCTGCTG
GATGGCTACCGCTGCTGCATCCATCCCGAGCACCGCGCCGCCCTCGCCGAGATCGCCCGCAACAGCCAGGTG
ACCAGCGACAGCTACATGGTCGACCGCGACCGCCTGACCGCGGCCAGCCCCACCGGCGCCTTCAACCTGGCG
CTGGAGTGGATCGCCCGGCGCCACGGGCGCGACCTGGTGGAGGCGGTGGTGGATATCCTCGCCTTCGAGGAG
TCGCGCTACCGACGGGTGCGCCCGGCCCTGCACGAGAAGATGAGCGAGCCGCTGCGCGAAGTGATCAACCTG
ATGGCGGCGAATATCGAGGAACCGCTCAGCCAGGAGCAGCTCGCCCACTACGTGGGGCGCTCGCGGCGGCAG
ATCGAGCGGCTGTTCCAGCAGCAGCTCGGAACCACGCCGGTGCGCTACTACCTGGAGTTGCGGATCACCGAG
TGCCGGCGCCTGCTGCAACATTCCGACCTGACCATGCTGGAGGTCCTGGTCGCCTGCGGCTTCGTCTCGCCC
AGCCACTTCAGCAAGTGCTACACCGCCTTCTACGGCTACCCGCCGTCGAAAGAAGTGCGCTACGGCAACGTC
CGCTCGACGAAATGA
Translation:
MERRRFSAALQGQNLRFTGAGEGGSARARVGFLLLEHFSLPAFTQALDTLVTANLIRSESFAVSNFSLSGEP
VTSDLGLLICPDLALASAARQGLDLLVVCGGLRTPLRSSAALREALQDVASRGVALAGLWNGAWFLGDAGLL
DGYRCCIHPEHRAALAEIARNSQVTSDSYMVDRDRLTAASPTGAFNLALEWIARRHGRDLVEAVVDILAFEE
SRYRRVRPALHEKMSEPLREVINLMAANIEEPLSQEQLAHYVGRSRRQIERLFQQQLGTTPVRYYLELRITE
CRRLLQHSDLTMLEVLVACGFVSPSHFSKCYTAFYGYPPSKEVRYGNVRSTK*
AnnotationID:2063GeneID:2055
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 08:08:56
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, AraC family
Cell Localization:()
Synonyms:PA4184
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4977
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69127.1|AE016546_8 (AE016787) transcriptional regulator, AraC family [Pseudomonas
           putida KT2440]
          Length = 335

 Score =  350 bits (899), Expect = 5e-96
 Identities = 187/332 (56%), Positives = 237/332 (71%), Gaps = 3/332 (0%)

>gb|AAO56545.1| (AE016866) transcriptional regulator, AraC family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 344

 Score =  221 bits (563), Expect = 5e-57
 Identities = 128/330 (38%), Positives = 192/330 (58%), Gaps = 9/330 (2%)








 
Structural Features:
COG4977, Transcriptional regulator containing an amidase domain 
and an AraC-type DNA-binding HTH domain [Transcription]
CD-Length = 328 residues,  97.9% aligned
Score =  293 bits (751), Expect = 2e-80
Identities = 135/323 (41%), Positives = 174/323 (53%), Gaps = 9/323 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4113




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21259




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36807




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2055_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2055
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3551
                           PA4184_tr
                           translation of PA4184
                           340
                           99.41
                           99.70
                           0
                           1722.0
     

     
     
109541
                           gb|AAG07571.1|AE004834_11
                           (AE004834) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           340
                           99.41
                           99.70
                           0
                           1722.0
     

     
     
109542
                           gb|AAN69127.1|AE016546_8
                           (AE016787) transcriptional regulator, AraC family [Pseudomonas putida KT2440]
                           343
                           54.81
                           69.67
                           11
                           902.0
     

     






      

          
GC ORFID: 45057How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4184Glimmer Score: 

          
Start: 4112358Stop: 4111336

          
Length: 1023


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4184 translation of PA4184Homolog Bit Score 667.0

          
Other Homologs:  t_PA4184 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAGAAGGCGTTTCAGCGCCGCCCTGCAAGGGCAGAACCTCAGGTTCACCGGGGCCGGGGAGGGGGGC 
TCGGCACGGGCACGGGTGGGCTTCCTGCTGCTCGAACACTTTTCCCTGCCGGCCTTCACCCAGGCGCTGGAC 
ACCCTGGTGACCGCCAACCTGATCCGCAGCGAGTCCTTCGCGGTGAGCAACTTCAGCCTGAGCGGCGAGCCG 
GTGACCAGCGACCTCGGGTTGCTGATCTGCCCGGACCTGGCGCTCGCCTCGGCGGCGCGGCAAGGACTCGAC 
CTGCTGGTGGTCTGCGGCGGTTTGCGCACGCCCCTGCGCTCGTCCGCCGCGCTGCGGGAAGCGTTGCAGGAC 
GTGGCGTCGCGCGGCGTCGCCCTGGCCGGGCTGTGGAACGGTGCCTGGTTCCTCGGCGACGCCGGCCTGCTG 
GATGGCTACCGCTGCTGCATCCATCCCGAGCACCGCGCCGCCCTCGCCGAGATCGCCCGCAACAGCCAGGTG 
ACCAGCGACAGCTACATGGTCGACCGCGACCGCCTGACCGCGGCCAGCCCCACCGGCGCCTTCAACCTGGCG 
CTGGAGTGGATCGCCCGGCGCCACGGGCGCGACCTGGTGGAGGCGGTGGTGGATATCCTCGCCTTCGAGGAG 
TCGCGCTACCGACGGGTGCGCCCGGCCCTGCACGAGAAGATGAGCGAGCCGCTGCGCGAAGTGATCAACCTG 
ATGGCGGCGAATATCGAGGAACCGCTCAGCCAGGAGCAGCTCGCCCACTACGTGGGGCGCTCGCGGCGGCAG 
ATCGAGCGGCTGTTCCAGCAGCAGCTCGGAACCACGCCGGTGCGCTACTACCTGGAGTTGCGGATCACCGAG 
TGCCGGCGCCTGCTGCAACATTCCGACCTGACCATGCTGGAGGTCCTGGTCGCCTGCGGCTTCGTCTCGCCC 
AGCCACTTCAGCAAGTGCTACACCGCCTTCTACGGCTACCCGCCGTCGAAAGAAGTGCGCTACGGCAACGTC 
CGCTCGACGAAATGA