ViewGene

Locus Name:
GeneID:
Location:

GeneID:2053
TrivialName: PA14_27980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27980
PAO1 Ortholog Locus:PA2795
Sequence Length:999
Protein Length:332
Start: 2421751
Stop: 2420753
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06183.1|AE004707_2 (AE004707) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 329/332 (99%), Positives = 329/332 (99%)
Sequence:
ATGCGCCCAGAACCGACTACCACCCCCGCCACCCTCTCACGCCGCTTTTCCGTTGCGCCGATGATGGACTGG
ACCGATCGCCACTGCCGCTTCTTCCTGCGCCAATTGTCCCGTCACACCTTGCTCTACACCGAGATGGTCACG
ACCGGCGCGTTGCTGCACGGCGATCGCCAGCGCTTCCTCCGCTACGACGAATGCGAGCACCCGCTGGCGCTG
CAGCTGGGCGGCAGCGTGCCGGCGGAATTGGCGGCCTGCGCGCGGCTGGCGGAAGAGGCCGGCTACGACGAG
GTCAACCTCAACGTCGGCTGCCCCAGCGACCGGGTCCAGCACAACATGATCGGCGCCTGCCTGATGGGGCAT
CCGGCGCTGGTGGCGGACTGCGTGAAGGCAATGCTGGATGCGGTGGAGATAGCGGTGACGGTGAAGCACCGC
ATCGGTATCAACGGGCGCGACAGCTATGCCGAACTCTGCGATTTCGTCGGCCAGGTGCGCGAGGCCGGCTGC
CGGAGCTTCACCGTGCATGCACGGATCGCCATCCTCGAAGGGCTCTCGCCCAAGGAAAACCGCGAGGTGCCG
CCGCTGCGCTACGAGGTCGCGGCGCAATTGAAGAAGGACTTCCCGGACCTGGAGATCGTCCTCAACGGCGGC
ATCAAGACCCTCGAGGCCTGCCGCGAGCACCTGCAGACCTTCGACGGCGTGATGCTCGGTCGCGAGGCCTAC
CACAACCCCTACCTGCTGGCCGCGGTGGACAGCCAGTTGTTCGGCAGCGAAGCGCCGCCGCTCAGTCGCAGC
GAGGCCTTGCTCCGTCTGCGTCCGTACATCGAGCGACACCAGGCCGAAGGCGGCGCGATGCATCACGTGACC
CGCCATATCCTCGGCCTGGCCCAGGGCTTCCCCGGCTCCCGGCGATTCCGCCAGTTGCTCTCGGTGGACGTG
CACAAGGCCGCCGATCCGCTGCGGGTTTTCGACCAGGCGCTGGAACTTCTGGCGGGGCGATAG
Translation:
MRPEPTTTPATLSRRFSVAPMMDWTDRHCRFFLRQLSRHTLLYTEMVTTGALLHGDRQRFLRYDECEHPLAL
QLGGSVPAELAACARLAEEAGYDEVNLNVGCPSDRVQHNMIGACLMGHPALVADCVKAMLDAVEIAVTVKHR
IGINGRDSYAELCDFVGQVREAGCRSFTVHARIAILEGLSPKENREVPPLRYEVAAQLKKDFPDLEIVLNGG
IKTLEACREHLQTFDGVMLGREAYHNPYLLAAVDSQLFGSEAPPLSRSEALLRLRPYIERHQAEGGAMHHVT
RHILGLAQGFPGSRRFRQLLSVDVHKAADPLRVFDQALELLAGR*
AnnotationID:2061GeneID:2053
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 16:04:56
Gene Name:
Confidence Code:3
GeneProduct:putative TIM-barrel protein
Cell Localization:()
Synonyms:yjbN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:putative tRNA-dihydrouridine synthase
Functional Category Confidence Code:5
COGs:COG0042
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67782.1|AE016409_8 (AE016782) TIM-barrel protein, yjbN family [Pseudomonas putida
           KT2440]
          Length = 336

 Score =  565 bits (1455), Expect = e-160
 Identities = 278/328 (84%), Positives = 295/328 (89%)

>gb|AAO55643.1| (AE016863) TIM-barrel protein, yjbN family [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 336

 Score =  533 bits (1372), Expect = e-151
 Identities = 262/329 (79%), Positives = 282/329 (85%)

>gb|AAL23067.1| (AE008898) putative TIM-barrel enzyme [Salmonella typhimurium LT2]
          Length = 332

 Score =  392 bits (1006), Expect = e-108
 Identities = 198/333 (59%), Positives = 248/333 (74%), Gaps = 3/333 (0%)
Structural Features:
COG0042, tRNA-dihydrouridine synthase 
[Translation, ribosomal structure and biogenesis]
Genomic Context:
Comment:
ReferenceID:4109
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21255
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36258
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2053_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2053

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3549 PA2795_tr translation of PA2795 332 99.09 99.09 0 1720.0
109405 gb|AAG06183.1|AE004707_2 (AE004707) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 332 99.09 99.09 0 1720.0
109406 gb|AAN67782.1|AE016409_8 (AE016782) TIM-barrel protein, yjbN family [Pseudomonas putida KT2440] 343 81.34 86.29 18 1457.0
109407 gb|AAO55643.1| (AE016863) TIM-barrel protein, yjbN family [Pseudomonas syringae pv. tomato str. DC3000] 336 77.97 84.22 4 1372.0
109408 gb|AAO71613.1| (AE016848) conserved hypothetical protein [Salmonella enterica subsp. enterica serovar Typhi Ty2] 334 59.58 74.25 4 1018.0
GC ORFID: 45055How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2795Glimmer Score:
Start: 2532175Stop: 2533173
Length: 999
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA2795 translation of PA2795Homolog Bit Score 667.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene927 (ORF: BLASTX 538.0), t_PA2795 (ORF: GLIMMER)
GC ORF Sequence
ATGCGCCCAGAACCGACTACCACCCCCGCCACCCTCTCACGCCGCTTTTCCGTTGCGCCGATGATGGACTGG
ACCGATCGCCACTGCCGCTTCTTCCTGCGCCAATTGTCCCGTCACACCTTGCTCTACACCGAGATGGTCACG
ACCGGCGCGTTGCTGCACGGCGATCGCCAGCGCTTCCTCCGCTACGACGAATGCGAGCACCCGCTGGCGCTG
CAGCTGGGCGGCAGCGTGCCGGCGGAATTGGCGGCCTGCGCGCGGCTGGCGGAAGAGGCCGGCTACGACGAG
GTCAACCTCAACGTCGGCTGCCCCAGCGACCGGGTCCAGCACAACATGATCGGCGCCTGCCTGATGGGGCAT
CCGGCGCTGGTGGCGGACTGCGTGAAGGCAATGCTGGATGCGGTGGAGATAGCGGTGACGGTGAAGCACCGC
ATCGGTATCAACGGGCGCGACAGCTATGCCGAACTCTGCGATTTCGTCGGCCAGGTGCGCGAGGCCGGCTGC
CGGAGCTTCACCGTGCATGCACGGATCGCCATCCTCGAAGGGCTCTCGCCCAAGGAAAACCGCGAGGTGCCG
CCGCTGCGCTACGAGGTCGCGGCGCAATTGAAGAAGGACTTCCCGGACCTGGAGATCGTCCTCAACGGCGGC
ATCAAGACCCTCGAGGCCTGCCGCGAGCACCTGCAGACCTTCGACGGCGTGATGCTCGGTCGCGAGGCCTAC
CACAACCCCTACCTGCTGGCCGCGGTGGACAGCCAGTTGTTCGGCAGCGAAGCGCCGCCGCTCAGTCGCAGC
GAGGCCTTGCTCCGTCTGCGTCCGTACATCGAGCGACACCAGGCCGAAGGCGGCGCGATGCATCACGTGACC
CGCCATATCCTCGGCCTGGCCCAGGGCTTCCCCGGCTCCCGGCGATTCCGCCAGTTGCTCTCGGTGGACGTG
CACAAGGCCGCCGATCCGCTGCGGGTTTTCGACCAGGCGCTGGAACTTCTGGCGGGGCGATAG