ViewGene
Locus Name:
GeneID:
Location:

GeneID:2052
TrivialName: PA14_29930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29930
PAO1 Ortholog Locus:PA2643
Sequence Length:996
Protein Length:331
Start: 2591470
Stop: 2590475
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06031.1|AE004693_2 (AE004693) NADH dehydrogenase I chain H [Pseudomonas aeruginosa PAO1]
Identities = 331/331 (100%), Positives = 331/331 (100%)
Sequence:
ATGAGTTGGCTGACTCCCGCTCTGGTCACCATCATCCTCACCGTGGTCAAGGCCATCGTGGTGCTGCTCGCC
GTGGTCATCTGCGGCGCCCTGCTCAGCTGGGTCGAGCGCCGCCTGCTCGGCCTCTGGCAGGACCGCTACGGC
CCCAACCGGGTCGGTCCGTTCGGTGCGTTCCAGCTCGGCGCGGACATGGTCAAGATGTTCTTCAAGGAGGAC
TGGACCCCGCCGTTCGCCGACAAGATGATCTTCACCCTGGCCCCGGTGATCGCGATGGGCGCCCTGCTCGTC
GCCTTCGCCATCGTGCCGATCACCCCCACCTGGGGCGTGGCGGACCTGAACATCGGCATCCTGTTCTTCTTC
GCCATGGCCGGCCTGACGGTGTACGCCGTGCTGTTCGCCGGCTGGTCGAGCAACAACAAGTTCGCCCTGCTC
GGCAGCCTGCGCGCCTCGGCCCAGACCATCTCCTACGAGGTGTTCCTGGCCCTGTCGCTGATGGGCATCGTC
GCCCAGGTCGGCTCGTTCAACATGCGCGACATCGTCCAGTACCAGATCGACAACGTCTGGTTCATCATTCCG
CAGTTCTTCGGCTTCTGCACCTTCATCATCGCCGGCGTCGCCGTGACCCACCGTCACCCGTTCGACCAGCCG
GAAGCGGAGCAGGAACTGGCGGACGGCTACCACATCGAGTACGCCGGGATGAAATGGGGCATGTTCTTCGTC
GGCGAGTACATCGGCATCGTGCTGGTCTCGGCGCTGCTGGCGACCCTGTTCTTCGGCGGCTGGCACGGTCCG
TTCCTGGACACCCTGCCCTGGCTGTCGTTCTTCTACTTCGCCGCCAAGACCGGCTTCTTCATCATGCTCTTC
ATCCTGATCCGCGCCTCGCTGCCGCGTCCGCGCTATGACCAGGTGATGGCGTTCAGCTGGAAGGTGTGCCTG
CCGCTGACCCTGATCAACCTGCTGGTGACCGGCGCGCTCGTGCTGGCCGCGGCCCAGTAA
Translation:
MSWLTPALVTIILTVVKAIVVLLAVVICGALLSWVERRLLGLWQDRYGPNRVGPFGAFQLGADMVKMFFKED
WTPPFADKMIFTLAPVIAMGALLVAFAIVPITPTWGVADLNIGILFFFAMAGLTVYAVLFAGWSSNNKFALL
GSLRASAQTISYEVFLALSLMGIVAQVGSFNMRDIVQYQIDNVWFIIPQFFGFCTFIIAGVAVTHRHPFDQP
EAEQELADGYHIEYAGMKWGMFFVGEYIGIVLVSALLATLFFGGWHGPFLDTLPWLSFFYFAAKTGFFIMLF
ILIRASLPRPRYDQVMAFSWKVCLPLTLINLLVTGALVLAAAQ*
AnnotationID:2060GeneID:2052
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:41
Gene Name:nuoH
Confidence Code:2
GeneProduct:NADH dehydrogenase I chain H
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1005
Secondary Functional Category(ies):
EC Number:1.6.5.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56849.1| (AE016868) NADH dehydrogenase I, H subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 335

 Score =  582 bits (1500), Expect = e-165
 Identities = 277/327 (84%), Positives = 304/327 (92%), Gaps = 1/327 (0%)

>gb|AAF97804.2|AF281148_8 (AF281148) NADH dehydrogenase I subunit H [Pseudomonas fluorescens]
          Length = 335

 Score =  571 bits (1472), Expect = e-162
 Identities = 273/330 (82%), Positives = 298/330 (90%), Gaps = 1/330 (0%)

>gb|AAL21223.1| (AE008804) NADH dehydrogenase I chain H [Salmonella typhimurium
           LT2]
          Length = 325

 Score =  498 bits (1283), Expect = e-140
 Identities = 243/331 (73%), Positives = 284/331 (85%), Gaps = 6/331 (1%)








 
Structural Features:
COG1005, NuoH, NADH:ubiquinone oxidoreductase subunit 1 (chain H) 
[Energy production and conversion]
CD-Length = 332 residues, 100.0% aligned
Score =  366 bits (941), Expect = 2e-102
Identities = 169/332 (50%), Positives = 228/332 (68%), Gaps = 1/332 (0%)








   
Genomic Context:






   
Comment:


















    ReferenceID:4107




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21253




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33220




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2052_cdd.html


    		




 
URL:

















    ReferenceID:34578




  
Author/Investigator(s):
        Camacho Carvajal MM, Wijfjes AH, Mulders IH, Lugtenberg BJ, Bloemberg GV.





  
Title:
        Characterization of NADH dehydrogenases of Pseudomonas fluorescens WCS365 and their role in competitive root colonization.




  
PubMed:
        12118882


MedLine:
        




    
Source:
Mol Plant Microbe Interact. 2002 Jul;15(7):662-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12118882









           
Homologs By Global Alignment 

           

       



     
Gene ID:2052
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3548
                           PA2643_tr
                           translation of PA2643
                           331
                           99.99
                           99.99
                           0
                           1724.0
     

     
     
109354
                           gb|AAG06031.1|AE004693_2
                           (AE004693) NADH dehydrogenase I chain H [Pseudomonas aeruginosa PAO1]
                           331
                           99.99
                           99.99
                           0
                           1724.0
     

     
     
109355
                           gb|AAO56849.1|
                           (AE016868) NADH dehydrogenase I, H subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           336
                           82.44
                           90.47
                           6
                           1498.0
     

     
     
109356
                           gb|AAN69708.1|AE016607_2
                           (AE016789) NADH dehydrogenase I, H subunit [Pseudomonas putida KT2440]
                           336
                           81.84
                           90.47
                           6
                           1485.0
     

     
     
109357
                           gb|AAF97804.2|AF281148_8
                           (AF281148) NADH dehydrogenase I subunit H [Pseudomonas fluorescens]
                           336
                           81.84
                           89.28
                           6
                           1474.0
     

     






      

          
GC ORFID: 45054How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2643Glimmer Score: 

          
Start: 2362456Stop: 2363451

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2643 translation of PA2643Homolog Bit Score 668.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2771 (ORF: BLASTX 582.0), t_PA2643 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTTGGCTGACTCCCGCTCTGGTCACCATCATCCTCACCGTGGTCAAGGCCATCGTGGTGCTGCTCGCC 
GTGGTCATCTGCGGCGCCCTGCTCAGCTGGGTCGAGCGCCGCCTGCTCGGCCTCTGGCAGGACCGCTACGGC 
CCCAACCGGGTCGGTCCGTTCGGTGCGTTCCAGCTCGGCGCGGACATGGTCAAGATGTTCTTCAAGGAGGAC 
TGGACCCCGCCGTTCGCCGACAAGATGATCTTCACCCTGGCCCCGGTGATCGCGATGGGCGCCCTGCTCGTC 
GCCTTCGCCATCGTGCCGATCACCCCCACCTGGGGCGTGGCGGACCTGAACATCGGCATCCTGTTCTTCTTC 
GCCATGGCCGGCCTGACGGTGTACGCCGTGCTGTTCGCCGGCTGGTCGAGCAACAACAAGTTCGCCCTGCTC 
GGCAGCCTGCGCGCCTCGGCCCAGACCATCTCCTACGAGGTGTTCCTGGCCCTGTCGCTGATGGGCATCGTC 
GCCCAGGTCGGCTCGTTCAACATGCGCGACATCGTCCAGTACCAGATCGACAACGTCTGGTTCATCATTCCG 
CAGTTCTTCGGCTTCTGCACCTTCATCATCGCCGGCGTCGCCGTGACCCACCGTCACCCGTTCGACCAGCCG 
GAAGCGGAGCAGGAACTGGCGGACGGCTACCACATCGAGTACGCCGGGATGAAATGGGGCATGTTCTTCGTC 
GGCGAGTACATCGGCATCGTGCTGGTCTCGGCGCTGCTGGCGACCCTGTTCTTCGGCGGCTGGCACGGTCCG 
TTCCTGGACACCCTGCCCTGGCTGTCGTTCTTCTACTTCGCCGCCAAGACCGGCTTCTTCATCATGCTCTTC 
ATCCTGATCCGCGCCTCGCTGCCGCGTCCGCGCTATGACCAGGTGATGGCGTTCAGCTGGAAGGTGTGCCTG 
CCGCTGACCCTGATCAACCTGCTGGTGACCGGCGCGCTCGTGCTGGCCGCGGCCCAGTAA