ViewGene
Locus Name:
GeneID:
Location:

GeneID:2050
TrivialName: PA14_40270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40270
PAO1 Ortholog Locus:PA1873
Sequence Length:1023
Protein Length:340
Start: 3597214
Stop: 3598236
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05262.1|AE004613_7 (AE004613) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 339/340 (99%), Positives = 339/340 (99%)
Sequence:
ATGCATCACGGTATCTCCCCGCCCCAGGACGCCGACCTGTTCGGCCTGATCTACGGTTTCCGTTTCCGCCCC
GGCGAAGCGGGGCGGGAAATCGACTCGGCTACCGCCCTCGCCTGCCTGCGGCAGGCTCGCGAGGAGGCGCCG
GACGAGTTCCTCTGGCTGCACCTGAACCTCGCCCATGCCGCCTGCGAGCGCTGGATGAAGAAGCATCTGGAA
CTGCCGGATTATTTCTTCGAAAGCCTGCGCGAGGGGTCGCGCTCGACGCGCATCGAACACGTCGACTCGGCG
CTGCTGGCAGTGGTCAACGACGTGGTCTTCAACTTCGGCCTGGTCTCTTCGGACGTCGCCACCCTGTGGGTC
TGCGCCCGTGGCCGGCTGCTGGTCAGTGCACGAGCGCAACCGCTGCGCTCGGTGGACAAGCTGCGCTCTTCG
GTGAAGCACGGCGAACCTTTCCGTTCGCCCCTGCAGTTGCTGATCCACCTGTTGCGCGACCAGGGCGACGTG
CTGACCCAGATCGTCCGCGAAACCAGcGTCGCAGTGGACCGCATCGAGGACCAGCTACTGGCCCTGCGCCTC
TCCGCCAACCGCGCCGACCTCGGCGCCATGCGACGCGTGCTGGTACGCCTGCAACGCCTGCTGGCGCTGGAG
CCCGGTTCGCTGCTGCGCCTGCTCAACcgACCCCCGGAATGGCTACAGGATGCCGATCTGCGGGAGCTGCGC
GaagccaCTGAGGAGTTCTCCCTGGTGATcagCGACCTGACCGCCCTgGGCGAACGGATCAAGCTGCTGCAG
GAAGAGATCGCGGCCAaGCTCAACGAACAGAACAACCGCATCCTCTTCACCCTGACCATGGTCACGGTGCTG
GCCCTGCCGATCAACATCGTCGCCGGCTTCTTCGGCATGAACGTCGGCGGGATTCCCTTCGCCGACGATCCT
GAAGGCTTCTGGATCATGCTCGTGCTGGTCGCCAGCTTCACCTTCCTCGCCGGCCGCTGGGCCTTCCGCAAG
CGCGGCGACTATTGA
Translation:
MHHGISPPQDADLFGLIYGFRFRPGEAGREIDSATALACLRQAREEAPDEFLWLHLNLAHAACERWMKKHLE
LPDYFFESLREGSRSTRIEHVDSALLAVVNDVVFNFGLVSSDVATLWVCARGRLLVSARAQPLRSVDKLRSS
VKHGEPFRSPLQLLIHLLRDQGDVLTQIVRETSVAVDRIEDQLLALRLSANRADLGAMRRVLVRLQRLLALE
PGSLLRLLNRPPEWLQDADLRELREATEEFSLVISDLTALGERIKLLQEEIAAKLNEQNNRILFTLTMVTVL
ALPINIVAGFFGMNVGGIPFADDPEGFWIMLVLVASFTFLAGRWAFRKRGDY*
AnnotationID:2058GeneID:2050
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:02
Gene Name:
Confidence Code:3
GeneProduct:putative cation transporter
Cell Localization:()
Synonyms:PA1873
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative Mg2+ and Co2+ transporters
Functional Category Confidence Code:5
COGs:COG0598
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO57170.1| (AE016869) cation transporter, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 339

 Score =  499 bits (1285), Expect = e-141
 Identities = 250/341 (73%), Positives = 300/341 (87%), Gaps = 3/341 (0%)








 
Structural Features:
COG0598, CorA, Mg2+ and Co2+ transporters 
[Inorganic ion transport and metabolism]
CD-Length = 322 residues,  91.3% aligned
Score =  203 bits (518), Expect = 2e-53
Identities = 88/294 (29%), Positives = 139/294 (47%), Gaps = 1/294 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4103




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21249




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37063




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2050_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2050
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3546
                           PA1873_tr
                           translation of PA1873
                           340
                           99.70
                           99.70
                           0
                           1724.0
     

     
     
109349
                           gb|AAG05262.1|AE004613_7
                           (AE004613) hypothetical protein PA1873 [Pseudomonas aeruginosa PAO1]
                           340
                           99.70
                           99.70
                           0
                           1724.0
     

     
     
109350
                           gb|AAO57170.1|
                           (AE016869) cation transporter, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           341
                           73.31
                           87.97
                           3
                           1289.0
     

     






      

          
GC ORFID: 45052How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1873Glimmer Score: 

          
Start: 1356696Stop: 1355674

          
Length: 1023


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1873 translation of PA1873Homolog Bit Score 668.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene620 (ORF: BLASTX 499.0), t_PA1873 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCATCACGGTATCTCCCCGCCCCAGGACGCCGACCTGTTCGGCCTGATCTACGGTTTCCGTTTCCGCCCC 
GGCGAAGCGGGGCGGGAAATCGACTCGGCTACCGCCCTCGCCTGCCTGCGGCAGGCTCGCGAGGAGGCGCCG 
GACGAGTTCCTCTGGCTGCACCTGAACCTCGCCCATGCCGCCTGCGAGCGCTGGATGAAGAAGCATCTGGAA 
CTGCCGGATTATTTCTTCGAAAGCCTGCGCGAGGGGTCGCGCTCGACGCGCATCGAACACGTCGACTCGGCG 
CTGCTGGCAGTGGTCAACGACGTGGTCTTCAACTTCGGCCTGGTCTCTTCGGACGTCGCCACCCTGTGGGTC 
TGCGCCCGTGGCCGGCTGCTGGTCAGTGCACGAGCGCAACCGCTGCGCTCGGTGGACAAGCTGCGCTCTTCG 
GTGAAGCACGGCGAACCTTTCCGTTCGCCCCTGCAGTTGCTGATCCACCTGTTGCGCGACCAGGGCGACGTG 
CTGACCCAGATCGTCCGCGAAACCAGcGTCGCAGTGGACCGCATCGAGGACCAGCTACTGGCCCTGCGCCTC 
TCCGCCAACCGCGCCGACCTCGGCGCCATGCGACGCGTGCTGGTACGCCTGCAACGCCTGCTGGCGCTGGAG 
CCCGGTTCGCTGCTGCGCCTGCTCAACcgACCCCCGGAATGGCTACAGGATGCCGATCTGCGGGAGCTGCGC 
GaagccaCTGAGGAGTTCTCCCTGGTGATcagCGACCTGACCGCCCTgGGCGAACGGATCAAGCTGCTGCAG 
GAAGAGATCGCGGCCAaGCTCAACGAACAGAACAACCGCATCCTCTTCACCCTGACCATGGTCACGGTGCTG 
GCCCTGCCGATCAACATCGTCGCCGGCTTCTTCGGCATGAACGTCGGCGGGATTCCCTTCGCCGACGATCCT 
GAAGGCTTCTGGATCATGCTCGTGCTGGTCGCCAGCTTCACCTTCCTCGCCGGCCGCTGGGCCTTCCGCAAG 
CGCGGCGACTATTGA