ViewGene
Locus Name:
GeneID:
Location:

GeneID:2049
TrivialName: PA14_53520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53520
PAO1 Ortholog Locus:PA0831
Sequence Length:1020
Protein Length:339
Start: 4745877
Stop: 4744858
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04220.1|AE004518_1 (AE004518) transcriptional regulator OruR [Pseudomonas aeruginosa PAO1]
Identities = 339/339 (100%), Positives = 339/339 (100%)
Sequence:
ATGAAACAACCGCTCAATTTCACCGCCGAACTGGTGCCGGTGGCCTATGCCGAGGCACTCCTCGATCTTGTC
GCGGAGTACGGCGTATCCCGCCAGGCGCTGTTCGACGCTGCGCGGGTGCGTCCCGAGGTGCTGGACAGCCCG
AACGGCCGCCTGTCCTTCCTCGACTTCAACCAGCTCACCTACAGCGCCCAGGCCCTGTGCGGCGAGCCGGCG
CTGGGGCTGGTGCTCGGCCAGCGCCTGAACGTCTCCGCCCACGGCATCCTCGGCTACGCGGTGCTGTCCAGC
GCCAACCTGGGCAAGGCCATCCAGTTCGCCCTCAAGTACTACCGGGTGCTCGGCTTGGCCTACGAACTGGAA
CTGGTGCTCGATGACGGCCGCGCCGAGTTGCGCGCGGTGGAGTCGATGCCGCTGGGCGCCGCTTCGGTGTTC
GCCGCCGAGGGCCTGATGGCGACGCTGTATTCCATCGCCTGCTTCCTGGTCGGCGAGCCGTTGCAGGACGTG
CGGGTCGGCTTCGCCTATCCGCCGCCGGCCCATGCCCGGCGCTACGCCGAGGTGTTCGGGGTGGCCGCGGAG
TTCGAGCAGCCCTGGCACTGGCTGAGCATGCCCAGCGAGTACCTGGAACGACCGATGGCGCTGGCCAACCCG
GCCACGGTGCAGATGTGCGAGCAGCAGTGCGAGGCGCTGCTGGCCACCCTGGACGTCCAGGAAGGCCTGCTG
ACCCGTGTGCGCCGCCTGCTGCTGGCGCGTCCCGGCGACTTCCCCGATCTCGAACAGGCCGCCCGCGAACTG
CACACCAGCGGGCGCAGCCTGCGCCGGCACCTGTCGTCGCTGGGCACCACCTACCAGCAGGTCCTCGACGAT
GTGCGCAAGCGCCTGGCCCTGCAATACCTGACCACCACCCAGCTACCGCTGTACGAGATTGCCCTGTTGCTC
GGCTTCAACGACTCGTCGAACTTCCGCCGGGCGTTCCGCAAGTGGACCGGCAAGCTGCCCAGCGACTACCGC
GAAGCGCCCTGA
Translation:
MKQPLNFTAELVPVAYAEALLDLVAEYGVSRQALFDAARVRPEVLDSPNGRLSFLDFNQLTYSAQALCGEPA
LGLVLGQRLNVSAHGILGYAVLSSANLGKAIQFALKYYRVLGLAYELELVLDDGRAELRAVESMPLGAASVF
AAEGLMATLYSIACFLVGEPLQDVRVGFAYPPPAHARRYAEVFGVAAEFEQPWHWLSMPSEYLERPMALANP
ATVQMCEQQCEALLATLDVQEGLLTRVRRLLLARPGDFPDLEQAARELHTSGRSLRRHLSSLGTTYQQVLDD
VRKRLALQYLTTTQLPLYEIALLLGFNDSSNFRRAFRKWTGKLPSDYREAP*
AnnotationID:2057GeneID:2049
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 14:02:46
Gene Name:oruR
Confidence Code:1
GeneProduct:transcriptional regulator OruR
Cell Localization:()
Synonyms:PA0831
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
100% identical to OruR, transcriptional regulator required for growth on
ornithine as the sole carbon source [Pseudomonas aeruginosa]. 






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4101




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21247




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31972




  
Author/Investigator(s):
        Hebert MD, Houghton JE.
Hebert MD, Houghton JE.
Hebert MD, Houghton JE.
Hebert MD, Houghton JE.






  
Title:
        Regulation of ornithine utilization in Pseudomonas aeruginosa (PAO1) is mediated by a transcriptional regulator, OruR.





  
PubMed:
        98062217


MedLine:
        




    
Source:
J Bacteriol. 1997 Dec;179(24):7834-42.






    
Reference Type:Journal 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2049
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3545
                           PA0831_tr
                           translation of PA0831
                           339
                           99.99
                           99.99
                           0
                           1724.0
     

     
     
109347
                           gb|AAG04220.1|AE004518_1
                           (AE004518) transcriptional regulator OruR [Pseudomonas aeruginosa PAO1]
                           339
                           99.99
                           99.99
                           0
                           1724.0
     

     
     
109348
                           gb|AAB94774.1|
                           (U73506) OruR [Pseudomonas aeruginosa]
                           339
                           99.99
                           99.99
                           0
                           1724.0
     

     






      

          
GC ORFID: 45051How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0831Glimmer Score: 

          
Start: 208030Stop: 209049

          
Length: 1020


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0831 translation of PA0831Homolog Bit Score 668.0

          
Other Homologs:  t_PA0831 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACAACCGCTCAATTTCACCGCCGAACTGGTGCCGGTGGCCTATGCCGAGGCACTCCTCGATCTTGTC 
GCGGAGTACGGCGTATCCCGCCAGGCGCTGTTCGACGCTGCGCGGGTGCGTCCCGAGGTGCTGGACAGCCCG 
AACGGCCGCCTGTCCTTCCTCGACTTCAACCAGCTCACCTACAGCGCCCAGGCCCTGTGCGGCGAGCCGGCG 
CTGGGGCTGGTGCTCGGCCAGCGCCTGAACGTCTCCGCCCACGGCATCCTCGGCTACGCGGTGCTGTCCAGC 
GCCAACCTGGGCAAGGCCATCCAGTTCGCCCTCAAGTACTACCGGGTGCTCGGCTTGGCCTACGAACTGGAA 
CTGGTGCTCGATGACGGCCGCGCCGAGTTGCGCGCGGTGGAGTCGATGCCGCTGGGCGCCGCTTCGGTGTTC 
GCCGCCGAGGGCCTGATGGCGACGCTGTATTCCATCGCCTGCTTCCTGGTCGGCGAGCCGTTGCAGGACGTG 
CGGGTCGGCTTCGCCTATCCGCCGCCGGCCCATGCCCGGCGCTACGCCGAGGTGTTCGGGGTGGCCGCGGAG 
TTCGAGCAGCCCTGGCACTGGCTGAGCATGCCCAGCGAGTACCTGGAACGACCGATGGCGCTGGCCAACCCG 
GCCACGGTGCAGATGTGCGAGCAGCAGTGCGAGGCGCTGCTGGCCACCCTGGACGTCCAGGAAGGCCTGCTG 
ACCCGTGTGCGCCGCCTGCTGCTGGCGCGTCCCGGCGACTTCCCCGATCTCGAACAGGCCGCCCGCGAACTG 
CACACCAGCGGGCGCAGCCTGCGCCGGCACCTGTCGTCGCTGGGCACCACCTACCAGCAGGTCCTCGACGAT 
GTGCGCAAGCGCCTGGCCCTGCAATACCTGACCACCACCCAGCTACCGCTGTACGAGATTGCCCTGTTGCTC 
GGCTTCAACGACTCGTCGAACTTCCGCCGGGCGTTCCGCAAGTGGACCGGCAAGCTGCCCAGCGACTACCGC 
GAAGCGCCCTGA