ViewGene
Locus Name:
GeneID:
Location:

GeneID:2048
TrivialName: PA14_06980
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06980
PAO1 Ortholog Locus:PA0536
Sequence Length:1026
Protein Length:341
Start: 606244
Stop: 605219
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03925.1|AE004490_5 (AE004490) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 340/341 (99%), Positives = 341/341 (100%)
Sequence:
ATGCGCCGGCTGCTACTGGGCGCCGGGCTGCTGCTCGCCAGCCTGGTCGCCTGGGCCGATGTGCCACCGATA
CCCGCGCTGACGGCGCGGGTCACCGACCTCACCGCGACCCTTTCCGGCGACCAGCGCCAGCACCTGGAGCAA
CAGCTCGCCGCCCTGGAAGCCAAGAGCGGCGCGCAGCTCGCTGTGCTGCTGGTCCCGACCACCGGCGACGAT
TCCATCGAGGAGTACGCGGTGCGTACCTTCGAGAAATGGAAGCTGGGCCAGAAGAAGGTCGACGACGGCGTC
CTGCTGCTGGTGGCGAAGAACGACCGCACCCTGCGCATCGAGGTCGGCTACGGCCTGGAAGGGGCCATCACC
GACGTCCAGGCCGGGCGGATCATCAGCGAGCAGATCACGCCGCAGTTCCGCCAGGGCAACTTCTATGGCGGC
ATCCAGGCCGGCGTGGACAGCCTGGTGCAACTGATCGATGCCGAGAAGAGCCCGGACAGCGCTACCGCCAGC
GCTCCCGTCGACGCCTTGCCGGCGGTTCCCGAGGCCACGCCGCCGCGGGCCCTGCCGGCACCGGTCGACGAG
GGTGAGGTGTATGACAGCGCCCCGCCGGAGCCGAAGAAGAAGAGCGGCCTGAGCGGACAGCTCTGGGGCAAT
CCGGTCTACCTCGGTGTCTATGTGGCGGTCCTGCTCGCCGTGGCCCTGCTCGGACGCCTGCTGCCGTTGCAG
TGGATGCGGCGGCGCAGCATCGGCCGCTTCCTGCTTTGCAGCGCGGCGGTCGCCGGCCTGGCCTGGCTGTTG
AGCATGGGCCTGTGGCAGAACGTCGACCGCGCGGCGGACGACAGTCTCGGCGTACTGGCCCCGACCCTGTTC
ATCTACGCCCTGTTCCTGCTTCCCGGCGAAGTGCTGATGGCCATTCTCAGCGCCATCCTCAATAGTCGCGGC
GGCGGTGGGGGAGGCGGCAGCGGCGGTGGCGGCATCTTCCGCGGTGGCGGCGGCTCCAGCGGCGGCGGCGGC
GCCTCCGGACGCTGGTGA
Translation:
MRRLLLGAGLLLASLVAWADVPPIPALTARVTDLTATLSGDQRQHLEQQLAALEAKSGAQLAVLLVPTTGDD
SIEEYAVRTFEKWKLGQKKVDDGVLLLVAKNDRTLRIEVGYGLEGAITDVQAGRIISEQITPQFRQGNFYGG
IQAGVDSLVQLIDAEKSPDSATASAPVDALPAVPEATPPRALPAPVDEGEVYDSAPPEPKKKSGLSGQLWGN
PVYLGVYVAVLLAVALLGRLLPLQWMRRRSIGRFLLCSAAVAGLAWLLSMGLWQNVDRAADDSLGVLAPTLF
IYALFLLPGEVLMAILSAILNSRGGGGGGGSGGGGIFRGGGGSSGGGGASGRW*
AnnotationID:2056GeneID:2048
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 18:06:08
Gene Name:
Confidence Code:3
GeneProduct:putative dehydrogenase
Cell Localization:()
Synonyms:PA0536
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1512
Secondary Functional Category(ies):energy metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1512, Beta-propeller domains of methanol dehydrogenase type
CD-Length = 271 residues,  98.2% aligned
Score =  215 bits (549), Expect = 5e-57
Identities = 133/341 (39%), Positives = 164/341 (48%), Gaps = 75/341 (21%)






   
Genomic Context:






   
Comment:


















    ReferenceID:4099




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21245




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33845




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2048_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2048
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3544
                           PA0536_tr
                           translation of PA0536
                           341
                           99.70
                           99.99
                           0
                           1727.0
     

     
     
109333
                           gb|AAG03925.1|AE004490_5
                           (AE004490) hypothetical protein PA0536 [Pseudomonas aeruginosa PAO1]
                           341
                           99.70
                           99.99
                           0
                           1727.0
     

     
     
109335
                           gb|AAM35727.1|
                           (AE011716) glycine rich protein [Xanthomonas axonopodis pv. citri str. 306]
                           360
                           39.72
                           51.38
                           93
                           557.0
     

     
     
109334
                           emb|CAE40547.1|
                           (BX640411) putative membrane protein [Bordetella pertussis] [Bordetella pertussis Tohama I]
                           372
                           38.97
                           50.00
                           103
                           574.0
     

     
     
109336
                           emb|CAD14193.1|
                           (AL646060) PUTATIVE GLYCINE RICH TRANSMEMBRANE PROTEIN [Ralstonia solanacearum]
                           366
                           33.33
                           45.35
                           112
                           466.0
     

     






      

          
GC ORFID: 45050How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0536Glimmer Score: 

          
Start: 6407586Stop: 6406561

          
Length: 1026


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0536 translation of PA0536Homolog Bit Score 669.0

          
Other Homologs:  t_PA0536 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCGGCTGCTACTGGGCGCCGGGCTGCTGCTCGCCAGCCTGGTCGCCTGGGCCGATGTGCCACCGATA 
CCCGCGCTGACGGCGCGGGTCACCGACCTCACCGCGACCCTTTCCGGCGACCAGCGCCAGCACCTGGAGCAA 
CAGCTCGCCGCCCTGGAAGCCAAGAGCGGCGCGCAGCTCGCTGTGCTGCTGGTCCCGACCACCGGCGACGAT 
TCCATCGAGGAGTACGCGGTGCGTACCTTCGAGAAATGGAAGCTGGGCCAGAAGAAGGTCGACGACGGCGTC 
CTGCTGCTGGTGGCGAAGAACGACCGCACCCTGCGCATCGAGGTCGGCTACGGCCTGGAAGGGGCCATCACC 
GACGTCCAGGCCGGGCGGATCATCAGCGAGCAGATCACGCCGCAGTTCCGCCAGGGCAACTTCTATGGCGGC 
ATCCAGGCCGGCGTGGACAGCCTGGTGCAACTGATCGATGCCGAGAAGAGCCCGGACAGCGCTACCGCCAGC 
GCTCCCGTCGACGCCTTGCCGGCGGTTCCCGAGGCCACGCCGCCGCGGGCCCTGCCGGCACCGGTCGACGAG 
GGTGAGGTGTATGACAGCGCCCCGCCGGAGCCGAAGAAGAAGAGCGGCCTGAGCGGACAGCTCTGGGGCAAT 
CCGGTCTACCTCGGTGTCTATGTGGCGGTCCTGCTCGCCGTGGCCCTGCTCGGACGCCTGCTGCCGTTGCAG 
TGGATGCGGCGGCGCAGCATCGGCCGCTTCCTGCTTTGCAGCGCGGCGGTCGCCGGCCTGGCCTGGCTGTTG 
AGCATGGGCCTGTGGCAGAACGTCGACCGCGCGGCGGACGACAGTCTCGGCGTACTGGCCCCGACCCTGTTC 
ATCTACGCCCTGTTCCTGCTTCCCGGCGAAGTGCTGATGGCCATTCTCAGCGCCATCCTCAATAGTCGCGGC 
GGCGGTGGGGGAGGCGGCAGCGGCGGTGGCGGCATCTTCCGCGGTGGCGGCGGCTCCAGCGGCGGCGGCGGC 
GCCTCCGGACGCTGGTGA