ViewGene
Locus Name:
GeneID:
Location:

GeneID:2046
TrivialName: PA14_01810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01810
PAO1 Ortholog Locus:PA0147
Sequence Length:963
Protein Length:320
Start: 165998
Stop: 166960
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03537.1|AE004452_9 (AE004452) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
Identities = 317/320 (99%), Positives = 319/320 (99%)
Sequence:
TTGGACCGTCTACCCATCATCGACATCGCCCCGCTCTACGGCGCCGACCGTGGCGCCTGGAACGACGTGGCG
CGGCGGATCGACCAGGCCTGCCGCGAGTGGGGCTTCTTCTACATCGCCGGACACCCGTTGCCGGCCGCGCGC
TTCGAAGCCCTGCTGGCGGCGGCGCGGGAGTTCTTCGCGCTGCCTGTCGAAGAGAAGCTGAAGATCGATATC
ACCCGTAGCCGCAACCATCGCGGCTATGGCGCGATCGCCACCGAGCAGCTCGACCCGGCGTTGCCCAGCGAC
TTCAAGGAGACCTTCGACATGGCCCTGCACCTGCCGGCGGAGCATCCCGACGTGCGCGCCGGCAAGTCCTTC
TACGGGCCCAACCGACACCCCGACCTGCCCGGTTGGGAGGCCCTGCTGGAAGGACACTATGTCGACATGCTG
GCGCTGGCCCGTACCGTGCTGCGCGCCCTGGCCATCGCCCTGGGGATCGAGGAGGACTTCTTCGACCGCCGC
TTCGAGCAGCCGGTCAGCGTATTCCGCCTGATCCACTATCCGCCGGCCGCCGCCCGACAGAGCGCCGACCAG
CCCGGCGCCGGCGCGCACACCGACTACGGCTGCGTGACCCTGCTCTACCAGGACGCCGCCGGTGGCCTGCAA
GTGCAGAACCGCCAGGGCGAATGGATCGACGCGCCGCCCATCGACGGCACCTTCGTGGTCAACATCGGCGAC
ATGATGGCGCGCTGGAGCAACGACCGTTACCGCTCGACCCCGCACCGGGTGATCAGCCCGCGCGGGGTGCAT
CGCTACTCCATGCCGTTCTTCGCCGAACCGCACATGGACACCGAGATCCGCTGCCTGCCGGGCTGCTTCGAC
GCGGACAACCCGCCGAAGTATCCGCCGACCACCTGTGGCGAGTGGCTGACCTCGCGCTTCGCGCAGACCTAT
GCCTATCGGCGCGGCGAAACGGCCTGA
Translation:
MDRLPIIDIAPLYGADRGAWNDVARRIDQACREWGFFYIAGHPLPAARFEALLAAAREFFALPVEEKLKIDI
TRSRNHRGYGAIATEQLDPALPSDFKETFDMALHLPAEHPDVRAGKSFYGPNRHPDLPGWEALLEGHYVDML
ALARTVLRALAIALGIEEDFFDRRFEQPVSVFRLIHYPPAAARQSADQPGAGAHTDYGCVTLLYQDAAGGLQ
VQNRQGEWIDAPPIDGTFVVNIGDMMARWSNDRYRSTPHRVISPRGVHRYSMPFFAEPHMDTEIRCLPGCFD
ADNPPKYPPTTCGEWLTSRFAQTYAYRRGETA*
AnnotationID:2054GeneID:2046
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 06:06:35
Gene Name:
Confidence Code:3
GeneProduct:putative dioxygenase
Cell Localization:()
Synonyms:PA0147
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:putative oxidoreductase
Functional Category Confidence Code:5
COGs:COG3491,pfam03171
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54300.1| (AE016858) oxidoreductase, 2OG-Fe(II) oxygenase family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 321

 Score =  484 bits (1247), Expect = e-136
 Identities = 225/320 (70%), Positives = 259/320 (80%)






 
Structural Features:
COG3491, PcbC, Isopenicillin N synthase and related dioxygenases 
CD-Length = 322 residues,  98.4% aligned
Score =  404 bits (1040), Expect = 6e-114
Identities = 157/321 (48%), Positives = 194/321 (60%), Gaps = 5/321 (1%)

pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily. 
CD-Length = 96 residues,  97.9% aligned
Score = 82.1 bits (202), Expect = 8e-17
Identities = 40/103 (38%), Positives = 49/103 (47%), Gaps = 11/103 (10%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14493




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21241




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33521




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2046_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2046
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3541
                           PA0147_tr
                           translation of PA0147
                           320
                           99.06
                           99.68
                           0
                           1725.0
     

     
     
109266
                           gb|AAG03537.1|AE004452_9
                           (AE004452) probable oxidoreductase [Pseudomonas aeruginosa PAO1]
                           320
                           98.75
                           99.68
                           0
                           1723.0
     

     
     
109267
                           gb|AAO54300.1|
                           (AE016858) oxidoreductase, 2OG-Fe(II) oxygenase family [Pseudomonas syringae pv. tomato str. DC3000]
                           321
                           69.78
                           80.68
                           1
                           1244.0
     

     
     
3542
                           PA4191_tr
                           translation of PA4191
                           345
                           39.42
                           53.91
                           36
                           556.0
     

     
     
109268
                           gb|AAG07578.1|AE004835_7
                           (AE004835) probable iron/ascorbate oxidoreductase [Pseudomonas aeruginosa PAO1]
                           345
                           39.42
                           53.91
                           36
                           556.0
     

     






      

          
GC ORFID: 45048How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0147Glimmer Score: 

          
Start: 5967337Stop: 5968299

          
Length: 963


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0147 translation of PA0147Homolog Bit Score 669.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3602 (ORF: BLASTX 498.0), t_PA4191 (ORF: BLASTX 212.0), t_PA0147 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGGACCGTCTACCCATCATCGACATCGCCCCGCTCTACGGCGCCGACCGTGGCGCCTGGAACGACGTGGCG 
CGGCGGATCGACCAGGCCTGCCGCGAGTGGGGCTTCTTCTACATCGCCGGACACCCGTTGCCGGCCGCGCGC 
TTCGAAGCCCTGCTGGCGGCGGCGCGGGAGTTCTTCGCGCTGCCTGTCGAAGAGAAGCTGAAGATCGATATC 
ACCCGTAGCCGCAACCATCGCGGCTATGGCGCGATCGCCACCGAGCAGCTCGACCCGGCGTTGCCCAGCGAC 
TTCAAGGAGACCTTCGACATGGCCCTGCACCTGCCGGCGGAGCATCCCGACGTGCGCGCCGGCAAGTCCTTC 
TACGGGCCCAACCGACACCCCGACCTGCCCGGTTGGGAGGCCCTGCTGGAAGGACACTATGTCGACATGCTG 
GCGCTGGCCCGTACCGTGCTGCGCGCCCTGGCCATCGCCCTGGGGATCGAGGAGGACTTCTTCGACCGCCGC 
TTCGAGCAGCCGGTCAGCGTATTCCGCCTGATCCACTATCCGCCGGCCGCCGCCCGACAGAGCGCCGACCAG 
CCCGGCGCCGGCGCGCACACCGACTACGGCTGCGTGACCCTGCTCTACCAGGACGCCGCCGGTGGCCTGCAA 
GTGCAGAACCGCCAGGGCGAATGGATCGACGCGCCGCCCATCGACGGCACCTTCGTGGTCAACATCGGCGAC 
ATGATGGCGCGCTGGAGCAACGACCGTTACCGCTCGACCCCGCACCGGGTGATCAGCCCGCGCGGGGTGCAT 
CGCTACTCCATGCCGTTCTTCGCCGAACCGCACATGGACACCGAGATCCGCTGCCTGCCGGGCTGCTTCGAC 
GCGGACAACCCGCCGAAGTATCCGCCGACCACCTGTGGCGAGTGGCTGACCTCGCGCTTCGCGCAGACCTAT 
GCCTATCGGCGCGGCGAAACGGCCTGA