ViewGene
Locus Name:
GeneID:
Location:

GeneID:2045
TrivialName: PA14_66660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66660
PAO1 Ortholog Locus:PA5044
Sequence Length:1065
Protein Length:354
Start: 5952103
Stop: 5951039
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08429.1|AE004917_8 (AE004917) type 4 fimbrial biogenesis protein PilM [Pseudomonas aeruginosa PAO1]
Identities = 354/354 (100%), Positives = 354/354 (100%)
Sequence:
GTGCTAGGGCTCATAAAGAAGAAAGCGAACACCTTGCTGGGGATCGACATCAGCTCGACCTCGGTAAAGCTC
CTTGAGTTGAGCCGCTCCGGAGGCCGCTACAAAGTGGAGGCCTATGCCGTCGAGCCGCTTCCGCCGAATGCA
GTCGTGGAAAAGAACATCGTCGAGCTGGAAGGGGTCGGCCAGGCGTTGTCACGGGTGCTGGTCAAGGCGAAA
ACCAACCTGAAGTCGGCCGTGGTCGCCGTCGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGAGGCC
GGGCTTTCCGAGGATGAACTGGAAAACCAGCTGAAGATCGAGGCCGACCAGTACATCCCCTATCCGCTGGAG
GAAGTCGCCATCGACTTCGAGGTCCAGGGACTCTCCGCGCGCAATCCTGAGCGCGTGGACGTACTCCTGGCC
GCCTGTCGGAAAGAGAACGTCGAGGTTCGCGAAGCGGCCCTGGCGCTGGCCGGCCTGACCGCCAAGGTGGTC
GACGTCGAGGCTTACGCGCTGGAGCGCTCCTATGCGCTGCTGAGCAGCCAGCTGGGTGCCGACACCGACCAG
TTGACCGTGGCGGTAGTGGACATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACAACGGACGCACCATC
TATACCCGCGAACAGCTGTTCGGCGGTCGCCAGCTCACCGAGGAGATCCAGCGGCGTTACGGACTCTCGGTG
GAGGAAGCCGGTCTCGCCAAGAAGCAGGGCGGTCTTCCGGATGACTACGACAGCGAAGTTCTGCGTCCGTTC
AAGGACGCCGTGGTGCAGCAGGTTTCCCGCTCGCTGCAGTTCTTCTTCGCCGCCGGACAGTTCAACGACGTC
GACTACATCGTCCTGGCGGGCGGTACGGCGTCTATCCAGGATCTCGATCGGTTGATCCAGCAGAAGATCGGC
ACCCCGACCCTGGTCGCCAACCCGTTCGCCGACATGGCGCTGAACGGCAAGGTGAATGCCGGCGCCCTGGCC
AGCGACGCTCCGGCGTTGATGATCGCCTGCGGCCTGGCGTTGAGGAGTTTCGACTGA
Translation:
MLGLIKKKANTLLGIDISSTSVKLLELSRSGGRYKVEAYAVEPLPPNAVVEKNIVELEGVGQALSRVLVKAK
TNLKSAVVAVAGSAVITKTIEMEAGLSEDELENQLKIEADQYIPYPLEEVAIDFEVQGLSARNPERVDVLLA
ACRKENVEVREAALALAGLTAKVVDVEAYALERSYALLSSQLGADTDQLTVAVVDIGATMTTLSVLHNGRTI
YTREQLFGGRQLTEEIQRRYGLSVEEAGLAKKQGGLPDDYDSEVLRPFKDAVVQQVSRSLQFFFAAGQFNDV
DYIVLAGGTASIQDLDRLIQQKIGTPTLVANPFADMALNGKVNAGALASDAPALMIACGLALRSFD*
AnnotationID:2053GeneID:2045
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 17:05:52
Gene Name:pilM
Confidence Code:1
GeneProduct:type 4 fimbrial biogenesis protein PilM
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:fimbrial assembly membrane protein
Functional Category Confidence Code:5
COGs:COG4972
Secondary Functional Category(ies):cell division
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58559.1| (AE016874) type IV pilus biogenesis protein PilM [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 354

 Score =  582 bits (1500), Expect = e-165
 Identities = 303/354 (85%), Positives = 330/354 (93%)

>gb|AAA93086.1| (L28837) membrane protein [Pseudomonas syringae]
          Length = 354

 Score =  581 bits (1498), Expect = e-165
 Identities = 303/354 (85%), Positives = 329/354 (92%)

>gb|AAM38228.1| (AE011984) fimbrial assembly membrane protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 360

 Score =  426 bits (1095), Expect = e-118
 Identities = 218/353 (61%), Positives = 282/353 (79%), Gaps = 1/353 (0%)






 
Structural Features:
COG4972, PilM, Tfp pilus assembly protein, ATPase PilM 
[Cell motility and secretion / Intracellular trafficking and secretion]
CD-Length = 354 residues, 100.0% aligned
Score =  433 bits (1116), Expect = 9e-123
Identities = 193/354 (54%), Positives = 240/354 (67%)






   
Genomic Context:






   
Comment:


















    ReferenceID:14491




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21239




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35019




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2045_cdd.html


    		




 
URL:

















    ReferenceID:35845




  
Author/Investigator(s):
        Martin PR, Watson AA, McCaul TF, Mattick JS.





  
Title:
        Characterization of a five-gene cluster required for the biogenesis of type 4 fimbriae in Pseudomonas aeruginosa.




  
PubMed:
        7565110


MedLine:
        




    
Source:
Mol Microbiol. 1995 May;16(3):497-508.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=7565110









           
Homologs By Global Alignment 

           

       



     
Gene ID:2045
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3540
                           PA5044_tr
                           translation of PA5044
                           354
                           99.99
                           99.99
                           0
                           1727.0
     

     
     
109254
                           gb|AAG08429.1|AE004917_8
                           (AE004917) type 4 fimbrial biogenesis protein PilM [Pseudomonas aeruginosa PAO1]
                           354
                           99.71
                           99.99
                           0
                           1724.0
     

     
     
109255
                           gb|AAA87402.1|
                           (U12892) GTG start [Pseudomonas aeruginosa]
                           354
                           99.71
                           99.99
                           0
                           1724.0
     

     
     
109256
                           gb|AAO58559.1|
                           (AE016874) type IV pilus biogenesis protein PilM [Pseudomonas syringae pv. tomato str. DC3000]
                           354
                           85.31
                           93.22
                           0
                           1496.0
     

     
     
109257
                           gb|AAA93086.1|
                           (L28837) membrane protein [Pseudomonas syringae]
                           354
                           85.31
                           92.93
                           0
                           1494.0
     

     






      

          
GC ORFID: 45047How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5044Glimmer Score: 

          
Start: 5215786Stop: 5214722

          
Length: 1065


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5044 translation of PA5044Homolog Bit Score 669.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3290 (ORF: BLASTX 580.0), t_PA5044 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGCTAGGGCTCATAAAGAAGAAAGCGAACACCTTGCTGGGGATCGACATCAGCTCGACCTCGGTAAAGCTC 
CTTGAGTTGAGCCGCTCCGGAGGCCGCTACAAAGTGGAGGCCTATGCCGTCGAGCCGCTTCCGCCGAATGCA 
GTCGTGGAAAAGAACATCGTCGAGCTGGAAGGGGTCGGCCAGGCGTTGTCACGGGTGCTGGTCAAGGCGAAA 
ACCAACCTGAAGTCGGCCGTGGTCGCCGTCGCCGGTTCGGCGGTGATCACCAAGACCATCGAGATGGAGGCC 
GGGCTTTCCGAGGATGAACTGGAAAACCAGCTGAAGATCGAGGCCGACCAGTACATCCCCTATCCGCTGGAG 
GAAGTCGCCATCGACTTCGAGGTCCAGGGACTCTCCGCGCGCAATCCTGAGCGCGTGGACGTACTCCTGGCC 
GCCTGTCGGAAAGAGAACGTCGAGGTTCGCGAAGCGGCCCTGGCGCTGGCCGGCCTGACCGCCAAGGTGGTC 
GACGTCGAGGCTTACGCGCTGGAGCGCTCCTATGCGCTGCTGAGCAGCCAGCTGGGTGCCGACACCGACCAG 
TTGACCGTGGCGGTAGTGGACATCGGCGCGACCATGACCACCCTGAGCGTCCTGCACAACGGACGCACCATC 
TATACCCGCGAACAGCTGTTCGGCGGTCGCCAGCTCACCGAGGAGATCCAGCGGCGTTACGGACTCTCGGTG 
GAGGAAGCCGGTCTCGCCAAGAAGCAGGGCGGTCTTCCGGATGACTACGACAGCGAAGTTCTGCGTCCGTTC 
AAGGACGCCGTGGTGCAGCAGGTTTCCCGCTCGCTGCAGTTCTTCTTCGCCGCCGGACAGTTCAACGACGTC 
GACTACATCGTCCTGGCGGGCGGTACGGCGTCTATCCAGGATCTCGATCGGTTGATCCAGCAGAAGATCGGC 
ACCCCGACCCTGGTCGCCAACCCGTTCGCCGACATGGCGCTGAACGGCAAGGTGAATGCCGGCGCCCTGGCC 
AGCGACGCTCCGGCGTTGATGATCGCCTGCGGCCTGGCGTTGAGGAGTTTCGACTGA