ViewGene
Locus Name:
GeneID:
Location:

GeneID:2044
TrivialName: PA14_20630
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20630
PAO1 Ortholog Locus:PA3359
Sequence Length:1011
Protein Length:336
Start: 1775755
Stop: 1776765
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06747.1|AE004758_4 (AE004758) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 335/336 (99%), Positives = 335/336 (99%)
Sequence:
ATGTCCGCCAACGACCTGCGTCAGTGCCTGCGCATCGCCGGCGGCGGCACCCTGGGGTTCTTCGTCTGCAAG
CTGATGAACTGGGACTACGGCTCGTTCTTCGGCGTCTACCCGATGCTGCTGCTCGGCCTGACGCCGGTGATC
AACCTGCACATCGTCCGCCAGTTCCTCGCCAACTCGGTGGTGATCAGCGTCGAGGTACTGGTGCTGTACGGG
TTGTTCGGCGACCGGCCGCTGCTGATGACGCCTATCGTCTTCGGCCTCTTCGTCTACCGCTTCGCCCTGATG
GCGCGCGGCCCGCTGTTCTTCTTCGGCGCACTGAGTTCGGTGTTCCTCTCGATGCTGCTGCACTTTGCCAGC
TATCCGGACGTCGATCTGTTCGACATGCTCGCCAGCAACATGGTCGCCACCTGGCTGACGGTGGCCATCGCC
GTGCTGATGTTCTACCTGTTCCCCGACGTCGAACCGCGGCCGCCGCGCCAGGCGCCGGCCAAGGACGCCCCC
AGCCGGCGCCACGAGACGCTGCTCGGGGCCACGGTGGCGACCCTGTCCTTCGTGGTCTTCCAGACCTTCGAC
CTGAAGGACTCGCTGTCGGCGCAGATCGCCTCGATCCTGGTGTTGTTTCCCATGCACTGGAAGGGCGTGCAC
TTCGCCGGGCGCATCCGCGCCCTCGGTACGCTGCTCGGCTGTGCGCTGGCGGTGGGCTTGCAGGTGCTGCTC
TACGATCACTACGACATCCTGCCCTTCGTCGCCCTGTTGCTGTGGATCTCGGCGATGTTCTGCGCGCGCATC
CACATGCTGGAGAACGGCGTACCGGGGATCGGTTTCGGCGCGCTGACCACCCTGGCGATCGTCCTCGGCCAG
TACCTGACGCCGACCCACGACATGATGTACAGCGTGCTCTACCGATTTACCTCGGTGTGCTTCGCGGTGCTG
ATCACGCTGATGACGGTGCTGGTGATCCACCTGTTTCTCAACCGCTTCGCCGCCACCCGGCACTACAGCCAC
TGA
Translation:
MSANDLRQCLRIAGGGTLGFFVCKLMNWDYGSFFGVYPMLLLGLTPVINLHIVRQFLANSVVISVEVLVLYG
LFGDRPLLMTPIVFGLFVYRFALMARGPLFFFGALSSVFLSMLLHFASYPDVDLFDMLASNMVATWLTVAIA
VLMFYLFPDVEPRPPRQAPAKDAPSRRHETLLGATVATLSFVVFQTFDLKDSLSAQIASILVLFPMHWKGVH
FAGRIRALGTLLGCALAVGLQVLLYDHYDILPFVALLLWISAMFCARIHMLENGVPGIGFGALTTLAIVLGQ
YLTPTHDMMYSVLYRFTSVCFAVLITLMTVLVIHLFLNRFAATRHYSH*
AnnotationID:2052GeneID:2044
AnnotatorUID: diggins
Modification Date/Time: 2005-04-17 17:05:32
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3359
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:4091




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:21237




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32195




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:2044_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:2044
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
3539
                           PA3359_tr
                           translation of PA3359
                           336
                           99.70
                           99.70
                           0
                           1725.0
     

     
     
109251
                           gb|AAG06747.1|AE004758_4
                           (AE004758) hypothetical protein PA3359 [Pseudomonas aeruginosa PAO1]
                           336
                           99.70
                           99.70
                           0
                           1725.0
     

     
     
109253
                           gb|AAN57024.1|AE015836_6
                           (AE015836) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           345
                           53.91
                           68.11
                           12
                           902.0
     

     
     
109252
                           dbj|BAC62560.1|
                           (AP005088) hypothetical protein [Vibrio parahaemolyticus]
                           346
                           51.73
                           68.49
                           11
                           919.0
     

     






      

          
GC ORFID: 45046How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3359Glimmer Score: 

          
Start: 3178177Stop: 3177167

          
Length: 1011


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3359 translation of PA3359Homolog Bit Score 669.0

          
Other Homologs:  t_PA3359 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGCCAACGACCTGCGTCAGTGCCTGCGCATCGCCGGCGGCGGCACCCTGGGGTTCTTCGTCTGCAAG 
CTGATGAACTGGGACTACGGCTCGTTCTTCGGCGTCTACCCGATGCTGCTGCTCGGCCTGACGCCGGTGATC 
AACCTGCACATCGTCCGCCAGTTCCTCGCCAACTCGGTGGTGATCAGCGTCGAGGTACTGGTGCTGTACGGG 
TTGTTCGGCGACCGGCCGCTGCTGATGACGCCTATCGTCTTCGGCCTCTTCGTCTACCGCTTCGCCCTGATG 
GCGCGCGGCCCGCTGTTCTTCTTCGGCGCACTGAGTTCGGTGTTCCTCTCGATGCTGCTGCACTTTGCCAGC 
TATCCGGACGTCGATCTGTTCGACATGCTCGCCAGCAACATGGTCGCCACCTGGCTGACGGTGGCCATCGCC 
GTGCTGATGTTCTACCTGTTCCCCGACGTCGAACCGCGGCCGCCGCGCCAGGCGCCGGCCAAGGACGCCCCC 
AGCCGGCGCCACGAGACGCTGCTCGGGGCCACGGTGGCGACCCTGTCCTTCGTGGTCTTCCAGACCTTCGAC 
CTGAAGGACTCGCTGTCGGCGCAGATCGCCTCGATCCTGGTGTTGTTTCCCATGCACTGGAAGGGCGTGCAC 
TTCGCCGGGCGCATCCGCGCCCTCGGTACGCTGCTCGGCTGTGCGCTGGCGGTGGGCTTGCAGGTGCTGCTC 
TACGATCACTACGACATCCTGCCCTTCGTCGCCCTGTTGCTGTGGATCTCGGCGATGTTCTGCGCGCGCATC 
CACATGCTGGAGAACGGCGTACCGGGGATCGGTTTCGGCGCGCTGACCACCCTGGCGATCGTCCTCGGCCAG 
TACCTGACGCCGACCCACGACATGATGTACAGCGTGCTCTACCGATTTACCTCGGTGTGCTTCGCGGTGCTG 
ATCACGCTGATGACGGTGCTGGTGATCCACCTGTTTCTCAACCGCTTCGCCGCCACCCGGCACTACAGCCAC 
TGA