ViewGene

Locus Name:
GeneID:
Location:

GeneID:2043
TrivialName: PA14_24400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24400
PAO1 Ortholog Locus:PA3073
Sequence Length:1023
Protein Length:340
Start: 2126247
Stop: 2125225
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06461.1|AE004731_9 (AE004731) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 336/340 (98%), Positives = 338/340 (99%)
Sequence:
ATGTTTGAGTTCGCCTGGCCCTGGGTCTTCGCCCTCGCCCCGTTGCCCTGGCTGCTGCGCCTGGTGCTGCCG
GCCGCCGACAGCGGCGAGGCGGCGCTCAAGGTGAGCTTCCTCGACGAACTCGAAAGCCTCGCCGGACGCCGT
GCCCGCGCACGCCTGCCGGCCTGGCGGCAGCAGGTGCGCTTCGCCCTGCTCTGGTTCCTCCTGCTGCTCGCC
GCGGCCCGCCCGCAGTGGGTCGGCGAACCCCTGCCGCTACCCGCCAGCGGCCGTGACCTGCTGCTCGCGGTG
GATGTCTCCGGCTCCATGGACTACCGCGACATGCGCTGGCAGGACGACGAGATCAGCCGCCTGGAACTGATC
AAGAAACTCTTCGGCGACTTCATCGAAGACCGTCGTGGCGACCGCGTCGGCCTGATCCTGTTCGGCAGCCAG
GCCTACCTGCAGGCGCCGCTGACCTTCGACCGGCACACCGTGCGGGTCTGGCTGGACGAGGCGCAGATCGGC
ATCGCCGGCAAGAACACCGCGATCGGCGACGCCATCGGCCTGGCGGTCAAGCGCCTGCGCCAGCGGCCCGCG
GAAAGCCGGGTGCTGGTGCTGATCACCGACGGCGCCAACACCGGCGGACAGATAGCCCCGCAGATCGCCGCG
CAACTGGCCGCCGAGCAACAGGTGAAGATCTACACCATCGGCGTCGGCGCCGACCCGCAGCAGGGCGGCGTG
CCCGGCCTGTTCGGCTTCAACCCGGGGCTCGATCTCGACGAGCCGACCCTGCGCGGTATCGCCGAGATCACT
GGCGGCGAATACTTCCGCGCGCGATCCAGCGCCGAGCTGGAAAGCATTTCCGCGACCCTCGACCGCCTCGAA
CCGGTCGCCCAGCAGACTACCCGGGCGCGCCCGGCCCTGGCGCTGTACAGTTGGCCGCTGGCCGCCGCCCTC
GGCCTGAGCGTGCTGCTGGTGGCGCTGGAACTCTGGCCACGGGAAAACCGGACCTGGCCGCGCCGCCGTTCC
GGGAGGCAACCATGA
Translation:
MFEFAWPWVFALAPLPWLLRLVLPAADSGEAALKVSFLDELESLAGRRARARLPAWRQQVRFALLWFLLLLA
AARPQWVGEPLPLPASGRDLLLAVDVSGSMDYRDMRWQDDEISRLELIKKLFGDFIEDRRGDRVGLILFGSQ
AYLQAPLTFDRHTVRVWLDEAQIGIAGKNTAIGDAIGLAVKRLRQRPAESRVLVLITDGANTGGQIAPQIAA
QLAAEQQVKIYTIGVGADPQQGGVPGLFGFNPGLDLDEPTLRGIAEITGGEYFRARSSAELESISATLDRLE
PVAQQTTRARPALALYSWPLAAALGLSVLLVALELWPRENRTWPRRRSGRQP*
AnnotationID:2051GeneID:2043
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 15:03:50
Gene Name:
Confidence Code:3
GeneProduct:putative von Willebrand factor type A domain
Cell Localization:()
Synonyms:PA3073
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2304,pfam00092
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67643.1|AE016394_4 (AE016781) von Willebrand factor type A domain protein [Pseudomonas
           putida KT2440]
          Length = 358

 Score =  480 bits (1236), Expect = e-135
 Identities = 238/325 (73%), Positives = 272/325 (83%)

>gb|AAO57231.1| (AE016869) von Willebrand factor type A domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 352

 Score =  475 bits (1223), Expect = e-133
 Identities = 231/325 (71%), Positives = 270/325 (83%)

>gb|AAN56100.1|AE015746_4 (AE015746) von Willebrand factor type A domain protein [Shewanella
           oneidensis MR-1]
          Length = 338

 Score =  271 bits (693), Expect = 4e-72
 Identities = 158/329 (48%), Positives = 202/329 (61%), Gaps = 14/329 (4%)

Structural Features:
COG2304, COG2304, Uncharacterized protein containing 
a von Willebrand factor type A (vWA) domain
CD-Length = 399 residues,  85.5% aligned
Score =  114 bits (286), Expect = 1e-26

pfam00092, VWA, von Willebrand factor type A domain.
CD-Length = 178 residues, 100.0% aligned
Score = 90.9 bits (225), Expect = 2e-19
Identities = 50/202 (24%), Positives = 79/202 (39%), Gaps = 32/202 (15%)
Genomic Context:
Comment:
ReferenceID:4089
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:21235
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32440
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:2043_cdd.html
URL:
Homologs By Global Alignment
Gene ID:2043

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
3538 PA3073_tr translation of PA3073 340 98.82 99.41 0 1727.0
109239 gb|AAG06461.1|AE004731_9 (AE004731) hypothetical protein PA3073 [Pseudomonas aeruginosa PAO1] 340 98.82 99.41 0 1727.0
109240 gb|AAN67643.1|AE016394_4 (AE016781) von Willebrand factor type A domain protein [Pseudomonas putida KT2440] 362 66.85 77.07 26 1233.0
109241 gb|AAO57231.1| (AE016869) von Willebrand factor type A domain protein [Pseudomonas syringae pv. tomato str. DC3000] 358 66.20 77.09 24 1217.0
109242 gb|AAN56100.1|AE015746_4 (AE015746) von Willebrand factor type A domain protein [Shewanella oneidensis MR-1] 364 44.78 56.59 50 701.0
GC ORFID: 45045How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3073Glimmer Score:
Start: 2827683Stop: 2828705
Length: 1023
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3073 translation of PA3073Homolog Bit Score 669.0
Other Homologs: psyr_15may02_Scaffold1_revised_gene666 (ORF: BLASTX 476.0), t_PA3073 (ORF: GLIMMER)
GC ORF Sequence
ATGTTTGAGTTCGCCTGGCCCTGGGTCTTCGCCCTCGCCCCGTTGCCCTGGCTGCTGCGCCTGGTGCTGCCG
GCCGCCGACAGCGGCGAGGCGGCGCTCAAGGTGAGCTTCCTCGACGAACTCGAAAGCCTCGCCGGACGCCGT
GCCCGCGCACGCCTGCCGGCCTGGCGGCAGCAGGTGCGCTTCGCCCTGCTCTGGTTCCTCCTGCTGCTCGCC
GCGGCCCGCCCGCAGTGGGTCGGCGAACCCCTGCCGCTACCCGCCAGCGGCCGTGACCTGCTGCTCGCGGTG
GATGTCTCCGGCTCCATGGACTACCGCGACATGCGCTGGCAGGACGACGAGATCAGCCGCCTGGAACTGATC
AAGAAACTCTTCGGCGACTTCATCGAAGACCGTCGTGGCGACCGCGTCGGCCTGATCCTGTTCGGCAGCCAG
GCCTACCTGCAGGCGCCGCTGACCTTCGACCGGCACACCGTGCGGGTCTGGCTGGACGAGGCGCAGATCGGC
ATCGCCGGCAAGAACACCGCGATCGGCGACGCCATCGGCCTGGCGGTCAAGCGCCTGCGCCAGCGGCCCGCG
GAAAGCCGGGTGCTGGTGCTGATCACCGACGGCGCCAACACCGGCGGACAGATAGCCCCGCAGATCGCCGCG
CAACTGGCCGCCGAGCAACAGGTGAAGATCTACACCATCGGCGTCGGCGCCGACCCGCAGCAGGGCGGCGTG
CCCGGCCTGTTCGGCTTCAACCCGGGGCTCGATCTCGACGAGCCGACCCTGCGCGGTATCGCCGAGATCACT
GGCGGCGAATACTTCCGCGCGCGATCCAGCGCCGAGCTGGAAAGCATTTCCGCGACCCTCGACCGCCTCGAA
CCGGTCGCCCAGCAGACTACCCGGGCGCGCCCGGCCCTGGCGCTGTACAGTTGGCCGCTGGCCGCCGCCCTC
GGCCTGAGCGTGCTGCTGGTGGCGCTGGAACTCTGGCCACGGGAAAACCGGACCTGGCCGCGCCGCCGTTCC
GGGAGGCAACCATGA